LOC120553060


Basic Information

Item Value
gene id LOC120553060
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3104725 ~ 3107628 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638090.1
tgttatgtATAAAGTACTTTATGTAGTTccttttaaatacaaaatgcaAATTGTAATGCTGACGAAGACAGGCGAACACATCGCCGGTTCCCGCCAATAGGTTCATTTTAGTTAGTGAACTACCTGGCAAAGAAGTCTTGCATCAATCTAATCTGTTGGGACCAACGTGCTAAATTTCACCTGCATGAGCTATTGTCACAGAGTACTTTGCCTCCATGCAGCTGAATTCCACTAATGCAATATAGAAATTGGCTgattctaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcctgccAAAATAACTATTCTTGATTATTCATTATAAGTTATTAGCTGTCAAATGTTGTTGTTGGCGTGATGAGAATGACCACTTGCTTGcttgacatttctgaatgctTATTGAACAGAAAGCTGACTGAGAACTGGAGCCTTACAACAGAGAAAATCCTCTATCGCCCCAAAAGAGAAGACGGGTGACCTTCTGAACAATCTTGAAGATCTCTCAGCAGACAGACGAGGAGACATCGCTTTGCTTCTGCTACCTGTGgtgatcccccccccccggcaCCTACAAAATCTGGAGAAAGATGGTCCGCCCCAGCTACGCCGAATCTACAAAAGCTTTCATAGATGAGCAGCCTgTTGGAACAAACATCGCTGAATACCTTACGAAAAGGACAAGCACAGAGGTCCCACATGTGCTTCTTCTTGAGGACAGGCATCAGTTTTCACAAGCCTTTGTTATAGTGCATGGACATGCCTTGGAGCACCCATCTCTTCTTGGGGCAGTAGATGCCTGCTTTAaggctttttatgtttttgatgtACAGTATCCTAGATCTTGTGCACAAGTGTGGGAGTTTTTGCAGACGATATATGGTATCCCTGGACATGTTAGATCATCAGTACAGATGATGCGAGCACAGTTTGCGGCACAGTGAACTGCAAACTGCTCGGGAGGCCGattacacactgccggcgtggcgtggcgtctgttgcgtgtcagctgcgtggatttttctatgtctttacacac
>XR_005638091.1
gagacagaaacacattgaaGAGATCGCTCTATCTGGAACCCCGCCCGCTGGATcttcacacagagaaaaacaagcGCACCTCTTCAACTGTCGTAACCCCCAGACACCCCAAATCGTTGTCTCTCGCTCTCGTGAGTTGGCATCGGACCAGCAGCTAATTttctcaaaaacacatttggttCGTCGGGCAGGGAGGCGAGAAAGCTGACTGAGAACTGGAGCCTTACAACAGAGAAAATCCTCTATCGCCCCAAAAGAGAAGACGGGTGACCTTCTGAACAATCTTGAAGATCTCTCAGCAGACAGACGAGGAGACATCGCTTTGCTTCTGCTACCTGTGgtgatcccccccccccggcaCCTACAAAATCTGGAGAAAGATGGTCCGCCCCAGCTACGCCGAATCTACAAAAGCTTTCATAGATGAGCAGCCTgTTGGAACAAACATCGCTGAATACCTTACGAAAAGGACAAGCACAGAGGTCCCACATGTGCTTCTTCTTGAGGACAGGCATCAGTTTTCACAAGCCTTTGTTATAGTGCATGGACATGCCTTGGAGCACCCATCTCTTCTTGGGGCAGTAGATGCCTGCTTTAaggctttttatgtttttgatgtACAGTATCCTAGATCTTGTGCACAAGTGTGGGAGTTTTTGCAGACGATATATGGTATCCCTGGACATGTTAGATCATCAGTACAGATGATGCGAGCACAGTTTGCGGCACAGTGAACTGCAAACTGCTCGGGAGGCCGattacacactgccggcgtggcgtggcgtctgttgcgtgtcagctgcgtggatttttctatgtctttacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638090.1 True 1069 lncRNA 0.45 3 3105824 3107628
XR_005638091.1 False 829 lncRNA 0.50 4 3104725 3107628

Neighbor

gene id symbol gene type direction distance location
trnat-ugu_32 NA coding upstream 171996 2932657 ~ 2932729 (+)
trnat-ugu_31 NA coding upstream 180530 2924123 ~ 2924195 (+)
trnat-ugu_30 NA coding upstream 182159 2922494 ~ 2922566 (+)
trnat-ugu_29 NA coding upstream 182823 2921830 ~ 2921902 (+)
trnat-ugu_28 NA coding upstream 183860 2920793 ~ 2920865 (+)
LOC120553565 NA coding downstream 3213 3110841 ~ 3117640 (+)
LOC120553725 NA coding downstream 153051 3260679 ~ 3302750 (+)
cct2 cct2 coding downstream 221322 3328950 ~ 3347986 (+)
LOC120553119 LOC104957567 coding downstream 439111 3546739 ~ 3567593 (+)
cand1 cand1 coding downstream 628854 3736482 ~ 3800595 (+)
G225467 NA non-coding upstream 31157 3072934 ~ 3073568 (+)
G225466 NA non-coding upstream 35415 3060053 ~ 3069310 (+)
G225460 NA non-coding upstream 53093 3048148 ~ 3051632 (+)
G225432 NA non-coding upstream 140694 2963389 ~ 2964031 (+)
G225428 NA non-coding upstream 150999 2953407 ~ 2953726 (+)
G225474 NA non-coding downstream 65389 3173017 ~ 3192309 (+)
G225475 NA non-coding downstream 68284 3175912 ~ 3195624 (+)
G225481 NA non-coding downstream 120048 3227676 ~ 3228033 (+)
G225448 NA non-coding downstream 138739 3246367 ~ 3249323 (+)
G225447 NA non-coding downstream 142414 3250042 ~ 3252294 (+)
G225394 NA other upstream 254129 2850153 ~ 2850596 (+)
G225344 NA other upstream 341139 2740384 ~ 2763586 (+)
G224811 LOC106958509,LOC107690788,LOC107671222,LOC107574171,LOC107579420 other upstream 441591 2642536 ~ 2663134 (+)
kcna1b LOC107101449,LOC101167438,LOC104943874,LOC101481979,LOC102202784,LOC103382518 other upstream 610227 2479638 ~ 2494498 (+)
G224728 NA other upstream 807723 2163643 ~ 2297002 (+)
G225445 NA other downstream 22316 3129944 ~ 3131302 (+)
LOC120553724 lgr5,LOC102312898,LOC102787110 other downstream 68912 3176540 ~ 3246203 (+)
nots LOC104935800 other downstream 245220 3352848 ~ 3377335 (+)
shank3b LOC103368171,LOC102784289,LOC102309694,LOC101473766,LOC102207252,LOC103382509,LOC107374533,LOC103154279 other downstream 312735 3420363 ~ 3506467 (+)
trnat-ugu_33 NA other downstream 402452 3510080 ~ 3510152 (+)

Expression


Co-expression Network