LOC120553079


Basic Information

Item Value
gene id LOC120553079
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10761253 ~ 10770671 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638094.1
GATGGTTATGGCAATCAACTGAGATAAACGGCTGAAAAATCATAAATTATGGACATAAagtgtatcaatcttggatgtaacagtttgGATTAATTGCACAAAAACCCCGAAAAACTCTGgacttccaggctggatagaaaaccttctgtaagggctaTGAAGACACCAAAGACATCAGCAGAACGGGGCAagtgttagcttttagctccaaAAGATGGTTTACAGAGATCTAACTGCATGGGAGCTCTGtaagagaaaacacaaggggCTACCACAGGGAATCATCGCTGCACAAACACCGTGGAAAAACAGCAACCTTGACTGATATCTTATGGAAAATGGGGAAAATGCTCCACAGTGGAACATTTGGGGCCGGTGTCCATTTACCAGCATGagaaaactgaatatttttccaCCATTTTTACCAGCCAAGGGTTGTTAGCACAAACAAAAGGAAATTCAAATAAAACCCAGCTTGAGGAAAGCTCAAACAGCAAatcgctttttgctcgcaggtttctctatagagctccccctacatctttggaatagatatttggcagctccagtgtttacttgtgtctgactcctcgctcggtcagtctgctgtttcctctttctctgttcctctgacaatgctttcctagctttctgcttctttgttGCTGGTTCAGCCATGATATTGtgaaaactccatcgctaccttgttagccggttcctgaatgggcgtatgtgtgcagtgccgtgaagcaattcgttatatcgcgagacctgatatcacgcgatccTTCCTGGCGGTGTGGCCAGCGGCTCGccggccgaaagttgcaagggtggtttttccgctcacaggcgctaggggggagcgagacgaccatataaccattccaatgactctgaagctgttaaaaaaaaaaaactgcatagttcccctttaacatGCTGTTACAAATTCTGCAGGATATGTTGGGCAAATGATTTCAGACAAACATTTATTGTAGTTTGTTCTGTTGTAGCTTTTATTGTTCAAAGAAGTCATATAAGAGTAATCCCCATTATGAACCACAAACTGCATAGTCTCTCTTGATTGTTGAAGACATGTGATAGATTTAACTGAGCAGGACAAATCATGTATATGAAATGTTTGATGGTGACATCTCCCTGTCTCAGAGTAACAGAAGGAAGCACACATCTATTTTAGGAAGATCAAAATATTTGAGTTTCCATTCTGTGCAAGTTTTAAGACATGTTGTCAtcttcaaaaattaaaaaaaaggcccCACAAAGCATCTGATCAATGTTTAGAGTGAAGGACAGGTGATACCAATCAATAAGCTCACATCGTAATCAGCATGAACATAGAAGTAGAGTCCATAGAGAGGGCATTCATAGCTAACAGAAACCAACATCCATATGTCCAGTAAAGTTGCAGGAGCTTGCAGATACAAAATAGAAAATCGCAagctatataataataattccaaagtaaaaaaaacttaaacatCTGAGTCCTGACATTCAGCAACAAGTATCCTATACAAAATGATACAAAATACAtcccactcacacatacacaatgtACCATTTAGTAAAGAAAGAACACAGATTCATTTAAATATCTCAAAGTCTCAGGGTCTCAGACTGTTTCTATAATGTTCTTGAGTCTTGAATtcacaaatgaaatgaaaacttGTCCTCTGTGATTTTCAATTTGGGTCCCATCTATTCATTTAATGTGAGGGAAATATTAACAcactgttttgtctttttgtcacTTGGCTTTAAAGTTTTAAAACGTGCATTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638094.1 True 1805 lncRNA 0.40 3 10761253 10770671

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-38g8.5 NA coding upstream 87202 10672048 ~ 10674051 (+)
scyl2 NA coding upstream 102242 10648321 ~ 10659011 (+)
depdc4 depdc4 coding upstream 117482 10638588 ~ 10643771 (+)
anks1b anks1b coding upstream 239016 10288477 ~ 10522237 (+)
uhrf1bp1l NA coding upstream 477153 10249758 ~ 10284100 (+)
LOC120553009 NA coding downstream 248555 11019226 ~ 11023758 (+)
lrrc4.1 LOC104918788,LOC103365345,LOC100694050 coding downstream 592092 11362763 ~ 11367955 (+)
pax4 NA coding downstream 682789 11453460 ~ 11456592 (+)
LOC120553760 NA coding downstream 1041356 11812027 ~ 11822653 (+)
LOC120553761 NA coding downstream 1044442 11815113 ~ 11822653 (+)
G227139 NA non-coding upstream 51708 10705910 ~ 10709545 (+)
G227116 NA non-coding upstream 93973 10665709 ~ 10667280 (+)
G227108 NA non-coding upstream 131041 10628808 ~ 10630212 (+)
G227107 tcp11l2,LOC102777109 non-coding upstream 133271 10625446 ~ 10627982 (+)
G227088 NA non-coding upstream 222564 10538196 ~ 10538689 (+)
G227152 btg1 non-coding downstream 71885 10842556 ~ 10851951 (+)
G227155 NA non-coding downstream 101376 10872047 ~ 10872679 (+)
LOC120553495 NA non-coding downstream 144264 10914935 ~ 10927854 (+)
G227177 NA non-coding downstream 164433 10935104 ~ 10935745 (+)
G227184 NA non-coding downstream 185813 10956484 ~ 10976314 (+)
G227141 dcn,LOC103382665 other upstream 23750 10732069 ~ 10737503 (+)
G227121 kera other upstream 61535 10697254 ~ 10699718 (+)
ndufb2 ndufb2,LOC102790702 other upstream 1519904 9237226 ~ 9241349 (+)
lhfpl3 lhfpl3,LOC101483460 other upstream 1588033 9134594 ~ 9173220 (+)
rps16 rps16,LOC103382554 other upstream 2328556 8426635 ~ 8432697 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 177614 10948285 ~ 10986201 (+)
G227216 NA other downstream 332165 11102836 ~ 11112905 (+)
G227278 LOC104928793 other downstream 918498 11689169 ~ 11757317 (+)
st8sia1 st8sia1 other downstream 1336281 12106952 ~ 12126545 (+)
plxna4 plxna4 other downstream 1888597 12659268 ~ 12910189 (+)

Expression


Co-expression Network