LOC120553135


Basic Information

Item Value
gene id LOC120553135
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10639747 ~ 10660499 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638112.1
tcagcatgcacaataccaggacctctcctaagtggaatgcagccatcattaatggtttggaatacacctgtgcttttcgtactatgacatgtcaacatgtctgccgtgaaaaaggcaTGGAAAAAGGTCTATACGTCCATGGCCAGCCACCTTTGTCGGCATTTTTCGGACCACTTAGTATACGGTGGCTAGGTAGTTTTGCTCCTCGGCCACCGTATGCTAATTGGTCCAAACTGTAGCAGTAACGTTAGTTCAAGTTCGTTTCaagttttaaatgtaaagttaatgaaataaagGTGGTTGTACTTTTTCTTCAAACGATGAGCAGCTTTTGGTATGGTTTTGCTGGAGGAAATGTCATGAAGAAGCTGTTTGAGGCTCTCCAGGGTGGTGGCCTCTCGCTGATCCTCATACTCCTGTGGCGTCACCTGCTGGCAGAAGCTTGGTACCCACTGGTTCAAACACCTTGGCCTCCATCAGAGCCTGGCAGAGTCGAGCAGCTTTGAGGCGAGACACTTCACTTGTGCAAAACACCACATTCTGCAT

Function

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638112.1 True 546 lncRNA 0.47 3 10639747 10660499

Neighbor

gene id symbol gene type direction distance location
LOC120553733 NA coding downstream 3827 10634748 ~ 10635920 (-)
tcp11l2 tcp11l2,LOC102777109 coding downstream 7370 10624020 ~ 10632377 (-)
apaf1 apaf1 coding downstream 16579 10564430 ~ 10623168 (-)
LOC120553502 NA coding downstream 375042 10263985 ~ 10264705 (-)
ckap4 NA coding downstream 392482 10242672 ~ 10247265 (-)
si:ch211-244b2.3 NA coding upstream 421 10660920 ~ 10665486 (-)
si:ch211-244b2.4 NA coding upstream 6003 10666502 ~ 10671184 (-)
epyc LOC104967728,LOC104925085 coding upstream 13960 10674459 ~ 10694296 (-)
kera kera,LOC103355179 coding upstream 35981 10696480 ~ 10703162 (-)
lum lum coding upstream 47188 10707687 ~ 10712180 (-)
G227089 NA non-coding downstream 101331 10538204 ~ 10538416 (-)
LOC120553506 NA non-coding downstream 101910 10509731 ~ 10537837 (-)
G227020 NA non-coding downstream 355662 10220956 ~ 10284085 (-)
G227021 pacsin2,LOC102778832 non-coding downstream 413850 10223494 ~ 10225897 (-)
G227019 NA non-coding downstream 419297 10218086 ~ 10220450 (-)
LOC120553801 NA non-coding upstream 279879 10940378 ~ 10942825 (-)
G227190 LOC104968094 non-coding upstream 288159 10948658 ~ 10949164 (-)
LOC120553014 samd3,LOC101476819 non-coding upstream 299861 10960360 ~ 10975333 (-)
G227211 NA non-coding upstream 362909 11023408 ~ 11023880 (-)
G227215 NA non-coding upstream 369345 11029844 ~ 11031005 (-)
G227082 anks1b other downstream 116785 10513494 ~ 10522962 (-)
dram1 dram1 other downstream 1825307 8809393 ~ 8814440 (-)
ppfia2 ppfia2 other downstream 1845837 8565242 ~ 8793910 (-)
G226495 LOC103356655,LOC105934024 other downstream 2748436 7888571 ~ 7891311 (-)
LOC120553151 LOC107386793,LOC104950937 other downstream 3145440 7422165 ~ 7494307 (-)
G227197 LOC102293685,LOC104918784,LOC102194436 other upstream 319699 10980198 ~ 10981259 (-)
hgfa LOC103365344,LOC104958230 other upstream 798082 11458581 ~ 11482578 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other upstream 956856 11617355 ~ 11676832 (-)
cracr2ab LOC102301749,LOC103365394 other upstream 1176749 11837248 ~ 11848941 (-)
G227429 LOC104958361,LOC103370548 other upstream 1624427 12284926 ~ 12288154 (-)

Expression


Co-expression Network