LOC120553205


Basic Information

Item Value
gene id LOC120553205
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15721524 ~ 15722242 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638130.1
AGCAAATGCACAAATATATGGTGGGAAAAATTGGTTTTGAACTAATTCTGCTGTGTCCAAAAGAACAAGATTCTTTACAGACAAGGGGCAGTGTCATCTGCATAGaACGACACTACAGACCAGAGTCTCTGGTAATAGTGATGGCCAAAGATTAAGAAACAAAGAGCTGCTGAGCCCTCCTCCCATAACCAACTTAACCCTGTTGCAGGAATGTGAGCGGCCCTGCCCTTCCATGAACTGAAGCTTAACAGCTTTGCTCCAGGCACATTCAGGTAACAGAGTGATCCTTCCTGAAAAGGTGAAACAATGGAGAGGGAAGGACATCTCAGAAGGTGTCACACCCGACATCTTATA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638130.1 True 354 lncRNA 0.45 3 15721524 15722242

Neighbor

gene id symbol gene type direction distance location
gxylt1b gxylt1,LOC103355206,LOC103459445 coding upstream 200289 15511849 ~ 15521235 (+)
zcrb1 zcrb1 coding upstream 228101 15491283 ~ 15493423 (+)
pus7l pus7l coding upstream 353405 15360929 ~ 15368119 (+)
LOC120553796 LOC104934096,LOC103355199 coding upstream 375799 15338839 ~ 15345725 (+)
fgl2a fgl2 coding upstream 465201 15246158 ~ 15256323 (+)
akap14 NA coding downstream 37069 15759311 ~ 15759832 (+)
avpr2l LOC103369361,LOC104965399,LOC107098425 coding downstream 40551 15762793 ~ 15764738 (+)
LOC120553452 NA coding downstream 47770 15770012 ~ 15772705 (+)
LOC120553449 LOC102291490,LOC101477496,LOC100701114,LOC102193524 coding downstream 54673 15776915 ~ 15789611 (+)
tfec tfec coding downstream 102102 15824344 ~ 15852844 (+)
G228136 NA non-coding upstream 21622 15689908 ~ 15699902 (+)
G228130 NA non-coding upstream 40033 15680373 ~ 15681491 (+)
G228128 cntn1 non-coding upstream 41255 15677355 ~ 15680269 (+)
G228119 NA non-coding upstream 190085 15531131 ~ 15531439 (+)
G228065 NA non-coding upstream 431016 15290187 ~ 15290508 (+)
G228164 NA non-coding downstream 70599 15792841 ~ 15794807 (+)
G228171 NA non-coding downstream 182819 15905061 ~ 15905664 (+)
G228172 NA non-coding downstream 293489 16015731 ~ 16078000 (+)
G228236 NA non-coding downstream 544097 16266339 ~ 16266550 (+)
G228246 NA non-coding downstream 599876 16322118 ~ 16324557 (+)
yaf2 yaf2,LOC102236902 other upstream 210346 15494677 ~ 15511178 (+)
prickle1b prickle1 other upstream 249637 15441985 ~ 15471887 (+)
lrrc17 LOC103355197,LOC103382847 other upstream 390346 15300522 ~ 15331178 (+)
LOC120553256 gsap,LOC102790605 other upstream 518483 15168604 ~ 15203041 (+)
LOC120553353 spam1,LOC103370765,LOC102199515,LOC101470336,LOC102310263 other upstream 1259050 14454593 ~ 14462474 (+)
tmem168a LOC103368481 other downstream 544894 16267136 ~ 16280061 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other downstream 1048816 16771058 ~ 16831243 (+)
stmp1 NA other downstream 1144068 16866310 ~ 16867796 (+)
morn2 morn2 other downstream 1158034 16880276 ~ 16916928 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other downstream 1197421 16919663 ~ 16922823 (+)

Expression


Co-expression Network