LOC120553214


Basic Information

Item Value
gene id LOC120553214
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19717222 ~ 19718412 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638134.1
tgttttggcgtagggaggaggggccTGAGGGGAGGGACAAAGGGGCGTGGTGTACAggtaatttgcataggctactgggAGAGACCGCAGCTCCACAGGCATCCTCACAGATTACCCATATCTGCAATGGcttccacaagttcacctggaacctccaaatctcaaGCACCTTCGACTGGGAGGCAGCTTACGGAGAGACTGCTGAGAAGGCTTCAGGAAGTTCTGCAACGTCAGCCTGTGGATTTTGACTATTTACACTTACACTGTTTTTAGTCATGAAATGGGACTTGTACCCTTTCGCATAGGCCAGTACACATTAACCCTCATATGCATTAtcattgcatttactgtaatttgttAAGAAATATAGAGTCAAATTCTTacttgaatatatttatttgttattcacTGAAAAGGTACAGATTTAACTGTTTTGCTGGAGcccatactgtaaatgcatgtcATTTCAAAAATTGTTAAGGATTAAAATCAGTACTACATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638134.1 True 502 lncRNA 0.42 2 19717222 19718412

Neighbor

gene id symbol gene type direction distance location
lrig3 lrig3 coding downstream 148165 19546626 ~ 19569057 (-)
rpap3 NA coding downstream 212916 19495419 ~ 19504306 (-)
trnal-cag_24 NA coding downstream 264194 19452946 ~ 19453028 (-)
trnal-cag_23 NA coding downstream 264672 19452469 ~ 19452550 (-)
trnal-cag_22 NA coding downstream 265149 19451988 ~ 19452073 (-)
LOC120553212 fam19a2,LOC103364248 coding upstream 14654 19733066 ~ 19806755 (-)
LOC120553419 timp3,LOC103152565 coding upstream 265067 19983479 ~ 20000522 (-)
cep83 cep83 coding upstream 541613 20260025 ~ 20272144 (-)
hcfc2 hcfc2 coding upstream 554114 20272526 ~ 20286587 (-)
mcm10 mcm10,LOC102783079 coding upstream 675654 20394066 ~ 20409676 (-)
G228885 NA non-coding downstream 147863 19550617 ~ 19569359 (-)
G228882 NA non-coding downstream 202788 19514103 ~ 19514434 (-)
G228881 atp23,LOC106609469 non-coding downstream 209662 19506683 ~ 19507560 (-)
G228880 NA non-coding downstream 217612 19499238 ~ 19499610 (-)
G228871 NA non-coding downstream 234069 19482867 ~ 19483153 (-)
G228946 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC106945279 non-coding upstream 134552 19852964 ~ 19905943 (-)
G228949 NA non-coding upstream 139691 19858103 ~ 19858863 (-)
G228947 LOC103152567,LOC106913527,LOC106945279,LOC106922717,LOC102300237 non-coding upstream 158685 19877097 ~ 19882079 (-)
G229062 NA non-coding upstream 637224 20355636 ~ 20357563 (-)
G229071 NA non-coding upstream 664053 20382465 ~ 20391508 (-)
sox5 sox5 other downstream 446886 19028609 ~ 19270336 (-)
LOC120553633 slc2a13,LOC103369283 other downstream 894132 18738396 ~ 18823090 (-)
gramd4a gramd4,LOC103376144 other downstream 1295815 18363259 ~ 18421407 (-)
tafa5a fam19a5,LOC103356475,LOC102793695 other downstream 1616227 17830616 ~ 18100995 (-)
G228465 NA other downstream 2415024 17295122 ~ 17302198 (-)
G228934 fam19a2,LOC103364248 other upstream 14690 19733102 ~ 19807098 (-)
etv6 etv6 other upstream 88402 19806814 ~ 19839350 (-)
rerg rerg other upstream 348483 20066895 ~ 20122393 (-)
cdk17 LOC104930593 other upstream 582680 20301092 ~ 20354627 (-)
G229199 NA other upstream 1239245 20957657 ~ 20958220 (-)

Expression


Co-expression Network