LOC120553277


Basic Information

Item Value
gene id LOC120553277
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8617814 ~ 8620495 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638149.1
cggacttttcaCTCTTAAAAATACTGGGTTATTTTATTGACCCAACCACTGGGTTGAGGCTGTTTAACCCTGTATTATGTATATTCAACCCATATTGGGTTACTTTCAGTAACCCAGTAGTTGGGTTACTGGTTTTGGACTGTGCCTTGATCTGAATAACCCAACCAATGGTCATTTTAACCCAGTGGTTGGGTTACATTCAAGTTTGGGATCCTCCTCCAacggtctttttcttttcctccgagGCGGGAGAACACTTTTGGAAACACTGAAGCGGTTGAATATGGAGGACTTTGTTAAACTAAAGTTAACAGAACGGCAACTTCTTGAGCTGATTGACACTTTTGCAGATTGTGCAGGACTTCGAGGTTCTTCATAAAGAGGCATCAGACTAAATCTTTGACCTGGAGGAGGTTCAGCGAGAAGCTTGCTCATGCGGCCCAGTGGGAGGGGTAGAAGCTCCACGTGCAGACAGAGTCTTTGTCTCAAGTTAGAAATTATAACATCAACATAACCCTTAGATTTGTATATTTGGATTTGTGCATTATTCGAGCCATAAGCTACTCTATGATAATAGATAAATAAACTATGATAATACTTATGtcaaactattttctttctttacaggCTCCAAAGACTACATTGCCCTGATGGTTCTGCCAAGCCTGATTCCACCTGCAGTCTTCAGAAAGGGCCGAAAGACCGTGAGGACTACAGTGTCTGACGCCATGAAGGCCTTCATCGATCTTAAGCCTgTCGGAGCCAACATGGTGGAGTACCTTCAGGCAGCAGAGCAGACCAGGCCATACCCCTGCACCCTGGTGTTGGGAGGCGAGGACTGCTGCTCTCAGGCATTCACCGTTCTCAGTGAGCCGGCCCTGGAGCACGACAGCGTTGTCCAAGCTGTACATgtttgtgtcaaatgtttttatgtgtttgatATCAATTTCCCAAAGCAGTGTTTCTCTGCTTAGCAGTTCCTCCAGAAAGAATGGGGGGGTGGTAGTTTGTTTTTTGGAAATGCTCATGCGATAAgggaattctctctctctctgtctctctttctctctc
>XR_005638150.1
caCTCTTAAAAATACTGGGTTATTTTATTGACCCAACCACTGGGTTGAGGCTGTTTAACCCTGTATTATGTATATTCAACCCATATTGGGTTACTTTCAGTAACCCAGTAGTTGGGTTACTGGTTTTGGACTGTGCCTTGATCTGAATAACCCAACCAATGGTCATTTTAACCCAGTGGTTGGGTTACATTCAAGTTTGGGATCCTCCTCCAacggtctttttcttttcctccgagGCGGGAGAACACTTTTGGAAACACTGAAGCGGTTGAATATGGAGGACTTTGTTAAACTAAAGTTAACAGAACGGCAACTTCTTGAGCTGATTGACACTTTTGCAGATTGTGCAGGACTTCGAGGTTCTTCATAAAGAGGCATCAGACTAAATCTTTGACCTGGAGGAGGTTCAGCGAGAAGCTTGCTCATGCGGCCCAGTGGGAGGGGTAGAAGCTCCACGTGCAGACAGAGTCTTTGTCTCAAgCTCCAAAGACTACATTGCCCTGATGGTTCTGCCAAGCCTGATTCCACCTGCAGTCTTCAGAAAGGGCCGAAAGACCGTGAGGACTACAGTGTCTGACGCCATGAAGGCCTTCATCGATCTTAAGCCTgTCGGAGCCAACATGGTGGAGTACCTTCAGGCAGCAGAGCAGACCAGGCCATACCCCTGCACCCTGGTGTTGGGAGGCGAGGACTGCTGCTCTCAGGCATTCACCGTTCTCAGTGAGCCGGCCCTGGAGCACGACAGCGTTGTCCAAGCTGTACATgtttgtgtcaaatgtttttatgtgtttgatATCAATTTCCCAAAGCAGTGTTTCTCTGCTTAGCAGTTCCTCCAGAAAGAATGGGGGGGTGGTAGTTTGTTTTTTGGAAATGCTCATGCGATAAgggaattctctctctctctgtctctctttctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638149.1 True 1071 lncRNA 0.45 4 8617814 8620495
XR_005638150.1 False 924 lncRNA 0.48 5 8617823 8620495

Neighbor

gene id symbol gene type direction distance location
acss3 acss3 coding upstream 52459 8515588 ~ 8565355 (+)
myf5 myf5 coding upstream 146780 8468661 ~ 8471034 (+)
myf6 myf6 coding upstream 153720 8462324 ~ 8464094 (+)
ppfibp1a LOC103362093,LOC102299773,LOC102192229 coding upstream 605003 7978077 ~ 8012811 (+)
tnnt2c LOC102777397 coding upstream 720331 7895545 ~ 7897483 (+)
washc3 ccdc53 coding downstream 182053 8802548 ~ 8807170 (+)
gnptab gnptab coding downstream 198075 8818570 ~ 8845025 (+)
atp6v1e1b LOC100708725,LOC104926722,LOC103358108,LOC106937970,LOC103156918,LOC106914460 coding downstream 297739 8918234 ~ 8926796 (+)
LOC120553730 LOC103358107,LOC100702291,LOC101477928 coding downstream 306577 8927072 ~ 8932977 (+)
LOC120553653 fgf6,LOC100708453,LOC101478942,LOC103358103 coding downstream 386063 9006558 ~ 9010187 (+)
G226554 NA non-coding upstream 209155 8341630 ~ 8408659 (+)
G226556 ppp1r12a non-coding upstream 258532 8356330 ~ 8359282 (+)
G226515 NA non-coding upstream 310986 8260333 ~ 8306828 (+)
G226507 syt1,LOC106518246,LOC100695586 non-coding upstream 560197 8047779 ~ 8057617 (+)
G226505 NA non-coding upstream 589153 8024361 ~ 8028661 (+)
G226638 NA non-coding downstream 249523 8870018 ~ 8870711 (+)
G226641 mybpc1 non-coding downstream 261322 8881817 ~ 8883677 (+)
G226720 NA non-coding downstream 314555 8935050 ~ 8935551 (+)
LOC120553611 NA non-coding downstream 321346 8941841 ~ 8943537 (+)
G226716 NA non-coding downstream 391647 9012142 ~ 9012662 (+)
rps16 rps16,LOC103382554 other upstream 185117 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 1048511 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 1085737 7525892 ~ 7532077 (+)
ascl1a ascl1 other upstream 1191560 7423618 ~ 7426254 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other upstream 1217415 7370442 ~ 7400399 (+)
lhfpl3 lhfpl3,LOC101483460 other downstream 514099 9134594 ~ 9173220 (+)
ndufb2 ndufb2,LOC102790702 other downstream 616731 9237226 ~ 9241349 (+)
G227121 kera other downstream 2076759 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 2111574 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 2327790 10948285 ~ 10986201 (+)

Expression


Co-expression Network