LOC120553376


Basic Information

Item Value
gene id LOC120553376
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17119099 ~ 17120584 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638158.1
CCACTCTCGGGCTCCGGACAGTCATTGTTTACCATATGGGCCGCAAACGTCCTTTCTGCCAGCTGGAACGTCTCCATGTCGTGAATGATGAAAGGCTGCggagaaagacagaggagaggatgCTGGTAGGTTACTGACACGGTTCTGTCTGCAGTGGGAGGCCATCGTAACAAACCCAATGACCCCCTCAGCAGTCAGTGCAGATGACGGGCCAGATGTGGAGCTATATGGGCCTGTGTTTTCTCAATGTCAAGCAGGCTCCGGCAGGACATTGTTCTATAAAAACCCAGTCAGTGTAAAGCATGTTGATTTGGAGCCAAAACACATTAGGACATTAACTGCTGTTGTTGAGAACACATACCATGGTGTTGACTGAGGACGTGGTGAGCAGAGTTTTATGTAACTGCATTCATGATGCTTACTTTCAAGTTCTGTCATTGCTATTACAGTATTGTATTGGATGCTAGGATTTCAGTAATTGAGCTAGCTGGACTGTTTTGAAAGATGATGCAACACACGTTTGACTCTCatacaaatgtattaaaagTTGAATTCATGCTATAAAGCAATAAAACGCACTCTTGCTCAGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638158.1 True 590 lncRNA 0.45 2 17119099 17120584

Neighbor

gene id symbol gene type direction distance location
LOC120553296 LOC103372063 coding upstream 86377 17021892 ~ 17032722 (+)
cdkn1d NA coding upstream 113785 17000945 ~ 17005314 (+)
LOC120553739 ascl4,LOC103372058 coding upstream 138342 16980006 ~ 16980757 (+)
tnnt2e NA coding upstream 264225 16833664 ~ 16854874 (+)
dock4b NA coding upstream 645426 16358792 ~ 16473673 (+)
wnt7ba wnt7b,LOC106575957 coding downstream 67602 17188186 ~ 17196857 (+)
LOC120553078 LOC104966316,LOC103366982,LOC104933494 coding downstream 113428 17234012 ~ 17237437 (+)
kdm5a NA coding downstream 117351 17237935 ~ 17260868 (+)
LOC120553077 LOC107383981,LOC106521814 coding downstream 142062 17262646 ~ 17275457 (+)
LOC120553489 usp15 coding downstream 155429 17276013 ~ 17297654 (+)
G228375 NA non-coding upstream 3756 17113825 ~ 17115343 (+)
G228374 NA non-coding upstream 6676 17109768 ~ 17112423 (+)
G228356 NA non-coding upstream 101107 17017545 ~ 17017992 (+)
G228355 NA non-coding upstream 103793 17015078 ~ 17015306 (+)
G228354 NA non-coding upstream 104435 17013681 ~ 17014664 (+)
G228384 NA non-coding downstream 16687 17137271 ~ 17138351 (+)
G228392 NA non-coding downstream 67342 17187926 ~ 17205640 (+)
LOC120553531 NA non-coding downstream 179139 17299723 ~ 17301020 (+)
LOC120553790 NA non-coding downstream 481608 17602192 ~ 17800250 (+)
G228571 NA non-coding downstream 1242666 18363250 ~ 18368382 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other upstream 196276 16919663 ~ 16922823 (+)
morn2 morn2 other upstream 202171 16880276 ~ 16916928 (+)
stmp1 NA other upstream 251303 16866310 ~ 16867796 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other upstream 287856 16771058 ~ 16831243 (+)
tmem168a LOC103368481 other upstream 839038 16267136 ~ 16280061 (+)
srr srr,LOC105936311,LOC103459528 other downstream 1409552 18530136 ~ 18533114 (+)
LOC120553630 muc19 other downstream 1702248 18822832 ~ 18855314 (+)
LOC120553164 NA other downstream 2232399 19352983 ~ 19355551 (+)
G228784 LOC103359233,LOC104943309,LOC100709697 other downstream 2289906 19410490 ~ 19413704 (+)
LOC120553210 LOC104943308 other downstream 2511353 19631937 ~ 19839382 (+)

Expression


Co-expression Network