LOC120553531


Basic Information

Item Value
gene id LOC120553531
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17299723 ~ 17301020 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638182.1
CACCCGTCCTGACGTTCCCCGCGAATTTTTATCCACGCCGCTCCGCCAAATCCACTCATTTTCCACACGTACCTGACATGCGGCATTTGCGGAGAGAAATGGCCAAAAGAAAATCGTGCTTTGCTCGGGATGTGGAtttgtacagttttttttgttttgttttttttgtcttttgaacCGAGTGGGTTTGATAGCGGGACAACTTTCCTGCACGAcgcagggacagacacagacaacaatAGATTATAAAACAATCTGCTGCAGTTCAGCTGCAAGGTGAACGACTGGATGACGAGGtggattttttttgcatttttttcacatCCAACAAAATCCTGtatgacAAAGCGACGCATGTCGGCTGCGTGCCGCTCAGAAAACTCACGGAGAGCCCCGCCGTCCTACCTGCCATATGCCATTTCCACCGAGGTCATCCGAGGAGAGCAGCGGGTGCAGGAAAAATGGGAAAGGTACaggaggtgttttttttttcttctttttttttctttttctttctttgggtGGGGTTTTTGTCTCGCTTTATTGCAGCCACGTTTTGCGCGCACGCCATTTTTGCCGTGCGCTTTTACGCACAGCGACACAGACTGAACGGAGGAGGGgtgaagacaaaagaaaaggcaAAGAGCACCGGGGGCCAAGCGCTGGTTGAGGTAGTAGTTTGTGCTGTTGGTCGGGTTGTCATATTACCCCTATGTGGAGATGACTGCGCAATCTACTGCCTTGCTGGCGCTGGTGACTTGCGTCAGAGGAGTCAAACGGATCCAACTGAATGACTGAGCTCACTGTGTAGTCGGTAAACAGAACACATTAAACCGAGATGGATATGCTTTCAAAATAATCACCTCTCCATTGTTGTGCGTAAATTGTCAGAACGTGTGAACTTGGACAGATATGTTCGAATGAAAAGCTAGAATATCTGCtactacattttaaaataaagtgaTTTTAATGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638182.1 True 975 lncRNA 0.46 2 17299723 17301020

Neighbor

gene id symbol gene type direction distance location
LOC120553489 usp15 coding upstream 2069 17276013 ~ 17297654 (+)
LOC120553077 LOC107383981,LOC106521814 coding upstream 24266 17262646 ~ 17275457 (+)
kdm5a NA coding upstream 38855 17237935 ~ 17260868 (+)
LOC120553078 LOC104966316,LOC103366982,LOC104933494 coding upstream 62286 17234012 ~ 17237437 (+)
wnt7ba wnt7b,LOC106575957 coding upstream 102866 17188186 ~ 17196857 (+)
il17rel NA coding downstream 30500 17331520 ~ 17348959 (+)
pim3 pim3 coding downstream 213519 17514539 ~ 17519517 (+)
alg12 alg12 coding downstream 269882 17570902 ~ 17576427 (+)
brd1a brd1,LOC101475857 coding downstream 283557 17584577 ~ 17601721 (+)
trnak-cuu_15 NA coding downstream 289071 17590091 ~ 17590163 (+)
G228392 NA non-coding upstream 94083 17187926 ~ 17205640 (+)
G228384 NA non-coding upstream 161372 17137271 ~ 17138351 (+)
LOC120553376 NA non-coding upstream 179139 17119099 ~ 17120584 (+)
G228375 NA non-coding upstream 184380 17113825 ~ 17115343 (+)
G228374 NA non-coding upstream 187300 17109768 ~ 17112423 (+)
LOC120553790 NA non-coding downstream 301172 17602192 ~ 17800250 (+)
G228571 NA non-coding downstream 1062230 18363250 ~ 18368382 (+)
G228581 NA non-coding downstream 1128105 18429125 ~ 18465053 (+)
LOC120553397 NA non-coding downstream 1181068 18482088 ~ 18485638 (+)
G228593 NA non-coding downstream 1232281 18533301 ~ 18534349 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other upstream 376900 16919663 ~ 16922823 (+)
morn2 morn2 other upstream 382795 16880276 ~ 16916928 (+)
stmp1 NA other upstream 431927 16866310 ~ 16867796 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other upstream 468480 16771058 ~ 16831243 (+)
tmem168a LOC103368481 other upstream 1019662 16267136 ~ 16280061 (+)
srr srr,LOC105936311,LOC103459528 other downstream 1229116 18530136 ~ 18533114 (+)
LOC120553630 muc19 other downstream 1521812 18822832 ~ 18855314 (+)
LOC120553164 NA other downstream 2051963 19352983 ~ 19355551 (+)
G228784 LOC103359233,LOC104943309,LOC100709697 other downstream 2109470 19410490 ~ 19413704 (+)
LOC120553210 LOC104943308 other downstream 2330917 19631937 ~ 19839382 (+)

Expression


Co-expression Network