LOC120553611


Basic Information

Item Value
gene id LOC120553611
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8941841 ~ 8943537 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638190.1
gctaaatgctaatgtcagctaaCCAATGATAATAatactaacatgctgatgtaaaGTGGGTATtgtttaccatcttagtttagcctATTAGCATTCCAACATTCACTAAATAGTTTTTCAGGCATTTGGtcattaaacaacaaacaaaaatgttgacCTAATGATTGTGCTAGATGGAAAGTCAATTAGACACATCGCCTGGAGACCGTGAACGTCTGTATAAGATGTCATGGCAACAATGAAGTAGTagttaagatatttcagtctggaccaaagtggaaAACTTCCCTCTCTAGTATTATGATGGTAGCATGGTTCAAATCAGGTAAAATCAGGTAACATTTGAACAACCATTCTACATCTACAACAAACGTGTGACAGTTCTTCAAGATGACGTAAAATAACGTTTTGGACTTTAATTACAGTGTTTAAGTCACTTTAATACACCCTAAAAATCTCACCCGGATGCCGAGTTCCACATTTTCACCACCATATATTTTCATTCCACCATCAAGGCTTCCGATCTCGCCAAAGAACTTTCGATCAGCTACAAGAATACCCATTATGGAGGGGCTCCTGAAGACAGAATTTGAATAGAACCAATGTCCCATGCTTCATATTAAAAAGGAACATGTTGTGAGTCGTCCTTTAAAGCGTACCACTCAGGTCTGAAGGACTCGTACATGCACCACAGAGCCCAGTCGAAGGCATCCGCAAAAGGTATATAGGGAGTCAGTGTCAAGTCATCAAAATTGACTTTGTCAAACACTGGTGTCAATATCACAGTCCGGTCCTCTTTAATCCGTGCTAACAACGGTTCAGCCCTGGACACACAGTGACAGTTTTACTTATGCTGTATGTCTTGACAAATCAGAAATAGATGATAATTATCACCACTGTAGCACAGCAAGGCAAACTAAGCTGTAACAACTCAGATCACCAACCATTGTACATGGACTTCTATGTGAGCGTCTAAGATGGCCACCACGTCCCCCACAGCAGCCCTCCATCccgacagtcttgcctgggtgAGGCCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638190.1 True 1038 lncRNA 0.41 3 8941841 8943537

Neighbor

gene id symbol gene type direction distance location
LOC120553730 LOC103358107,LOC100702291,LOC101477928 coding upstream 8864 8927072 ~ 8932977 (+)
atp6v1e1b LOC100708725,LOC104926722,LOC103358108,LOC106937970,LOC103156918,LOC106914460 coding upstream 15045 8918234 ~ 8926796 (+)
gnptab gnptab coding upstream 96816 8818570 ~ 8845025 (+)
washc3 ccdc53 coding upstream 134671 8802548 ~ 8807170 (+)
acss3 acss3 coding upstream 376486 8515588 ~ 8565355 (+)
LOC120553653 fgf6,LOC100708453,LOC101478942,LOC103358103 coding downstream 63021 9006558 ~ 9010187 (+)
fgf23 fgf23 coding downstream 73549 9017086 ~ 9020129 (+)
llph llph coding downstream 143636 9087173 ~ 9089548 (+)
guca1a LOC103358093,LOC102788764 coding downstream 173268 9116805 ~ 9119985 (+)
LOC120553346 ergic2 coding downstream 324661 9268198 ~ 9273908 (+)
G226720 NA non-coding upstream 6290 8935050 ~ 8935551 (+)
G226641 mybpc1 non-coding upstream 58164 8881817 ~ 8883677 (+)
G226638 NA non-coding upstream 71130 8870018 ~ 8870711 (+)
LOC120553277 NA non-coding upstream 321346 8617814 ~ 8620495 (+)
G226554 NA non-coding upstream 533182 8341630 ~ 8408659 (+)
G226716 NA non-coding downstream 68605 9012142 ~ 9012662 (+)
G226717 NA non-coding downstream 69306 9012843 ~ 9013646 (+)
G226747 NA non-coding downstream 72078 9015615 ~ 9015901 (+)
G226748 NA non-coding downstream 72536 9016073 ~ 9016275 (+)
G226755 NA non-coding downstream 94236 9037773 ~ 9039826 (+)
rps16 rps16,LOC103382554 other upstream 509144 8426635 ~ 8432697 (+)
LOC120553156 LOC104945813 other upstream 1372538 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 1409764 7525892 ~ 7532077 (+)
ascl1a ascl1 other upstream 1515587 7423618 ~ 7426254 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other upstream 1541442 7370442 ~ 7400399 (+)
lhfpl3 lhfpl3,LOC101483460 other downstream 191057 9134594 ~ 9173220 (+)
ndufb2 ndufb2,LOC102790702 other downstream 293689 9237226 ~ 9241349 (+)
G227121 kera other downstream 1753717 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 1788532 10732069 ~ 10737503 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other downstream 2004748 10948285 ~ 10986201 (+)

Expression


Co-expression Network