LOC120553618


Basic Information

Item Value
gene id LOC120553618
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19524075 ~ 19559043 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638191.1
GTGTCAGACAAACGGTTTGAGTCAGTCAACTGAACTGAAAATGGATGAAACGGCTCCAAAAAATAATCAGAATTCCTGTCCTCTTGGTGCGAGACCTTCCTGTTTCTACGTCAGCGAACCCCGTGCgttatgtatagtatgtcgggcAGACTTTAGCGTAGAACACGCGGGTAAAATGACGTTAGCAAATATGCTAATTATAGCAAACATGAACTATATATCTATGAACATGAACAGGCTGGCATGCTAACAACAACGGCTCTTTCCTCGTGAGAGGTGTGACGGAGGCTGTTAAAGTCAGGAAGGCAGAGGGTTAGGCCACTCCATGATGAGCCAGAAAATCTCCCTCTTTTTCATAGCCCAATGTCAGGACTTCCATTTTGCCGAGGCCCCAGAAGGCTCCGTCCATCAGGCGGCTCAGGCCGTTTCTCTGCATTTTTAAGGAGCGAAGAGCTTGCAGACCGTGGAAGGTCAGGCCCTCCACTTTGCGAACCCGGTTCCTGCTCAActccctgaaacacacacaaaacacttACAGATGCTGGAGGTTGGGCAACTGGAAGATCTTAGCTGGGATGGTGGAGAGCCGGTTGCGGTTGAGCCGAAGAACCTGCAGACTGCTGGACAGtggCGCCTGTAATGAAAAGCAGGGCTGCGTGCGCTGTTGAGACGCCATATTCGACTCTGCATATATCTCACTCAGATGGCTAATCATCTTCACACGTCGGCTCCCAGTCGGAGTGGAGAGAAGCAGGGATCGTATTAACATGTGAACTGAAGGACCTTCACATAAAAATGACAGGGGAGCTTTAGTAAAATTCGGGAGGTATCAGTGTTTCTGTATTGCCTACAAgactgaaaaaaacatcaaattacGGGTGTAAGATAAGTTCCTAAATGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638191.1 True 902 lncRNA 0.48 5 19524075 19559043

Neighbor

gene id symbol gene type direction distance location
atp23 atp23,LOC102777000,LOC106609469 coding upstream 16484 19504380 ~ 19507591 (+)
LOC120553398 NA coding upstream 28752 19487602 ~ 19495323 (+)
LOC120553799 NA coding upstream 40923 19478917 ~ 19483152 (+)
LOC120553798 LOC104924523,LOC103359230,LOC104954154,LOC103382963,LOC106531213 coding upstream 44800 19473150 ~ 19479275 (+)
mapk11 mapk11,LOC100700904,LOC103382962 coding upstream 53102 19454824 ~ 19470973 (+)
LOC120553510 slc16a7,LOC103364250 coding downstream 35370 19594413 ~ 19627713 (+)
LOC120553417 syn3 coding downstream 364728 19923771 ~ 20047996 (+)
LOC120553415 NA coding downstream 565598 20124641 ~ 20162039 (+)
LOC120553750 NA coding downstream 615408 20174451 ~ 20184363 (+)
LOC120553751 NA coding downstream 626039 20185082 ~ 20190908 (+)
G228787 NA non-coding upstream 103246 19420372 ~ 19420829 (+)
LOC120553381 NA non-coding upstream 615194 18905236 ~ 18908881 (+)
LOC120553383 NA non-coding upstream 626548 18892174 ~ 18897527 (+)
G228622 NA non-coding upstream 784591 18738484 ~ 18739484 (+)
G228611 LOC102192848,LOC101469293 non-coding upstream 846510 18676351 ~ 18677565 (+)
LOC120553213 NA non-coding downstream 157219 19716262 ~ 19717346 (+)
G228905 NA non-coding downstream 250632 19809675 ~ 19810580 (+)
LOC120553215 NA non-coding downstream 274964 19834007 ~ 19841662 (+)
G228912 NA non-coding downstream 310350 19869393 ~ 19871723 (+)
G228922 NA non-coding downstream 357072 19916115 ~ 19916317 (+)
G228784 LOC103359233,LOC104943309,LOC100709697 other upstream 110371 19410490 ~ 19413704 (+)
LOC120553164 NA other upstream 168524 19352983 ~ 19355551 (+)
LOC120553630 muc19 other upstream 668761 18822832 ~ 18855314 (+)
srr srr,LOC105936311,LOC103459528 other upstream 990961 18530136 ~ 18533114 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other upstream 2601252 16919663 ~ 16922823 (+)
LOC120553210 LOC104943308 other downstream 72894 19631937 ~ 19839382 (+)
LOC120553104 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC103459764,LOC106945279 other downstream 293885 19852928 ~ 19905952 (+)
G228924 NA other downstream 423205 19982248 ~ 19985648 (+)
LOC120553749 NA other downstream 588035 20147078 ~ 20173407 (+)
LOC120553418 NA other downstream 631885 20190928 ~ 20225185 (+)

Expression


Co-expression Network