LOC120553621


Basic Information

Item Value
gene id LOC120553621
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 6429094 ~ 6501060 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638192.1
TTTAGGTGATGACTCCATTCGTGTTTATTCGTCTTATTCCCAGTTTATTTTCCCTCTTTGATATAGATGCTGTTTTCAGCCGGGCGCGTGGGAGCACAGACTGAGAGAGACTTGGCAAAGCGTCGTATTTTTCCTCTCCAGGACAGCCCTAtacctggagagagagagagagagagagagcgagagcgagagcgtTTCTCACTCAGGCAAACCTGAGACTGAACTTGGATGCAAACTGCTGTAGCTGCCATTGTCAAGCTGTCAGCGGACTCGTGTAATTATCCTCTTGAAAAGTATCGCGGAGCCATTATCCACAAAGTACCCGTTATAGGTGCTCAGAGGCAACACATGACGGGACCGGCGCACCATCAGCATCCAGTGACGACGTCCACGAGTAGGTGAAGATGAACCGGCCTTTCTGATCAAAGGACCCGTCTATAAAGCTCAAGGCTGGCCTTCCTAGACGGTGAATCACTGCACACTGGACTGGCCGCCCGGCCACGCCCCCCAACAGTGATGTCAGAGCAGGTGTTTCCCATCAGCTGTTAAAGgCCTCACCATTCACGCCCCTTTGTAACTCGAGCTGCTCAGATTGATGGGAGGATGGCTCTCATTTGGACCAGGAGAAAAGTGGCCAGTTTAAGGGCTGCTACTGTATTTTAAACGGCACTGGTGTTAAAGAGACTGATGTGCCTGGTGGCGTCGGCGGCAACGGTGACCCTCCCTCCTGGCTGGGTGCAAAACTCCCATTGGGAGAATAAGAGAGAAGAAGGGGGAAGGAAGGCGGGAGGAGGGGGCGAGGACGGGAATGAATCTGCGTGGCGGCGGGAATCGATCGTTTCTCCCTCCTTCCCGCGCTATCTCATCTGCAGGGGCTGAGAGAGGCAGAGTGGTTTAAACGATCCTGACCTTGTCCGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638192.1 True 919 lncRNA 0.53 4 6429094 6501060

Neighbor

gene id symbol gene type direction distance location
echdc3 echdc3,LOC102797483 coding upstream 1029791 5393640 ~ 5399303 (+)
kcnj8 kcnj8 coding upstream 1036154 5383033 ~ 5392940 (+)
LOC120553019 NA coding upstream 1190750 5235150 ~ 5238344 (+)
LOC120553055 NA coding upstream 1624852 4793287 ~ 4804242 (+)
dmtf1 NA coding upstream 1679852 4734262 ~ 4749242 (+)
kin kin,LOC103372864 coding downstream 12785 6513845 ~ 6519452 (+)
itih5 itih5 coding downstream 34115 6535175 ~ 6553086 (+)
sfmbt2 sfmbt2 coding downstream 78052 6579112 ~ 6636681 (+)
gnsa gns,LOC102788091 coding downstream 218048 6719108 ~ 6734409 (+)
LOC120553270 NA coding downstream 475272 6976332 ~ 6995588 (+)
LOC120553126 NA non-coding upstream 139195 6183044 ~ 6289899 (+)
G226097 NA non-coding upstream 331186 6097678 ~ 6097908 (+)
G226085 NA non-coding upstream 509680 5919094 ~ 5919414 (+)
G226042 NA non-coding upstream 652661 5750128 ~ 5776433 (+)
G226029 NA non-coding upstream 875769 5552521 ~ 5553325 (+)
G226292 eri1,LOC102785739 non-coding downstream 656430 7157490 ~ 7157887 (+)
G226306 ndufa12 non-coding downstream 712332 7213392 ~ 7216386 (+)
G226316 NA non-coding downstream 766449 7267509 ~ 7268758 (+)
G226317 NA non-coding downstream 768044 7269104 ~ 7270753 (+)
G226318 NA non-coding downstream 770257 7271317 ~ 7271707 (+)
abcc9 abcc9,LOC107387088 other upstream 1055457 5281258 ~ 5373637 (+)
G225894 NA other upstream 1771125 4657444 ~ 4657969 (+)
LOC120553793 NA other upstream 2490140 3935674 ~ 3938954 (+)
LOC120553144 rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 other upstream 2587920 3814481 ~ 3841174 (+)
trnat-ugu_40 NA other upstream 2894422 3534600 ~ 3534672 (+)
prkcq prkcq,LOC102789446 other downstream 159460 6660520 ~ 6686639 (+)
snrpf snrpf,LOC106576293 other downstream 817457 7318517 ~ 7321189 (+)
amdhd1 amdhd1 other downstream 822010 7323070 ~ 7332259 (+)
klhl42 klhl42 other downstream 862265 7363325 ~ 7368216 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other downstream 869382 7370442 ~ 7400399 (+)

Expression


Co-expression Network