trnat-ugu_31


Basic Information

Item Value
gene id trnat-ugu_31
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 2924123 ~ 2924195 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_1463
GGCTCCATAGCTCAGGGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGTGAGTTCAATTCTCACTGGGGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1463 True 73 tRNA 0.55 1 2924123 2924195

Neighbor

gene id symbol gene type direction distance location
trnat-ugu_30 NA coding upstream 1557 2922494 ~ 2922566 (+)
trnat-ugu_29 NA coding upstream 2221 2921830 ~ 2921902 (+)
trnat-ugu_28 NA coding upstream 3258 2920793 ~ 2920865 (+)
trnat-ugu_27 NA coding upstream 4958 2919093 ~ 2919165 (+)
trnat-ugu_26 NA coding upstream 6582 2917469 ~ 2917541 (+)
trnat-ugu_32 NA coding downstream 8462 2932657 ~ 2932729 (+)
LOC120553565 NA coding downstream 186646 3110841 ~ 3117640 (+)
LOC120553725 NA coding downstream 336484 3260679 ~ 3302750 (+)
cct2 cct2 coding downstream 404755 3328950 ~ 3347986 (+)
LOC120553119 LOC104957567 coding downstream 622544 3546739 ~ 3567593 (+)
G225377 NA non-coding upstream 143599 2780055 ~ 2780524 (+)
G225346 NA non-coding upstream 165716 2756389 ~ 2758407 (+)
G224808 NA non-coding upstream 286116 2636467 ~ 2638007 (+)
G224799 NA non-coding upstream 288022 2580720 ~ 2636101 (+)
G225419 NA non-coding downstream 10695 2934890 ~ 2937696 (+)
G225420 NA non-coding downstream 15193 2939388 ~ 2945892 (+)
G225428 NA non-coding downstream 29212 2953407 ~ 2953726 (+)
G225432 NA non-coding downstream 39194 2963389 ~ 2964031 (+)
G225460 NA non-coding downstream 123953 3048148 ~ 3051632 (+)
G225394 NA other upstream 73527 2850153 ~ 2850596 (+)
G225344 NA other upstream 160537 2740384 ~ 2763586 (+)
G224811 LOC106958509,LOC107690788,LOC107671222,LOC107574171,LOC107579420 other upstream 260989 2642536 ~ 2663134 (+)
kcna1b LOC107101449,LOC101167438,LOC104943874,LOC101481979,LOC102202784,LOC103382518 other upstream 429625 2479638 ~ 2494498 (+)
G224728 NA other upstream 627121 2163643 ~ 2297002 (+)
G225445 NA other downstream 205749 3129944 ~ 3131302 (+)
LOC120553724 lgr5,LOC102312898,LOC102787110 other downstream 252345 3176540 ~ 3246203 (+)
nots LOC104935800 other downstream 428653 3352848 ~ 3377335 (+)
shank3b LOC103368171,LOC102784289,LOC102309694,LOC101473766,LOC102207252,LOC103382509,LOC107374533,LOC103154279 other downstream 496168 3420363 ~ 3506467 (+)
trnat-ugu_33 NA other downstream 585885 3510080 ~ 3510152 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnat-ugu-27 NA coding NC_048566.1 CM023220.2 15254079 ~ 15254151 (-)
striped catfish (Pangasianodon hypophthalmus) trnat-ugu_15 NA coding NC_047623.1 CM018569.1 14546106 ~ 14546178 (-)
mexican tetra (Astyanax mexicanus) trnat-ugu_15 NA coding NC_035899.1 CM008302.1 6926199 ~ 6926271 (-)
mexican tetra (Astyanax mexicanus) trnat-ugu_71 NA coding NC_035899.1 CM008302.1 6983771 ~ 6983843 (-)