trnay-gua_60


Basic Information

Item Value
gene id trnay-gua_60
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10195784 ~ 10195870 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_1484
CcttcgatagctcagttggtagagcggaggACTGTAGATCCTTAGGTCGCTGGTTCAAATCCGGCTCGAAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1484 True 73 tRNA 0.53 2 10195784 10195870

Neighbor

gene id symbol gene type direction distance location
bik NA coding downstream 8811 10183285 ~ 10186973 (-)
si:ch73-352p4.8 LOC105937590,LOC104962836,LOC107085821,LOC102237094,LOC103140239,LOC107386545,LOC103459124 coding downstream 42630 10147639 ~ 10153154 (-)
rhno1 NA coding downstream 55078 10138942 ~ 10140706 (-)
zmp:0000000711 tulp3 coding downstream 57549 10117159 ~ 10138235 (-)
ptn ptn,LOC106927343 coding downstream 123003 10030163 ~ 10072781 (-)
trnay-gua_61 NA coding upstream 477 10196347 ~ 10196433 (-)
ckap4 NA coding upstream 46802 10242672 ~ 10247265 (-)
LOC120553502 NA coding upstream 68115 10263985 ~ 10264705 (-)
apaf1 apaf1 coding upstream 368560 10564430 ~ 10623168 (-)
tcp11l2 tcp11l2,LOC102777109 coding upstream 428150 10624020 ~ 10632377 (-)
G226917 NA non-coding downstream 453224 9742004 ~ 9742560 (-)
G226803 LOC103358093,LOC102788764 non-coding downstream 1075813 9116810 ~ 9119971 (-)
G226800 NA non-coding downstream 1155927 9037771 ~ 9039857 (-)
G226797 NA non-coding downstream 1166414 9029046 ~ 9029370 (-)
G226787 NA non-coding downstream 1225886 8969389 ~ 8969898 (-)
G227019 NA non-coding upstream 22216 10218086 ~ 10220450 (-)
G227020 NA non-coding upstream 25086 10220956 ~ 10284085 (-)
G227021 pacsin2,LOC102778832 non-coding upstream 27624 10223494 ~ 10225897 (-)
LOC120553506 NA non-coding upstream 313861 10509731 ~ 10537837 (-)
G227089 NA non-coding upstream 342334 10538204 ~ 10538416 (-)
dram1 dram1 other downstream 1381344 8809393 ~ 8814440 (-)
ppfia2 ppfia2 other downstream 1401874 8565242 ~ 8793910 (-)
G226495 LOC103356655,LOC105934024 other downstream 2304473 7888571 ~ 7891311 (-)
LOC120553151 LOC107386793,LOC104950937 other downstream 2701477 7422165 ~ 7494307 (-)
usp44 usp44,LOC102783730 other downstream 2917460 7269037 ~ 7278324 (-)
G227082 anks1b other upstream 317624 10513494 ~ 10522962 (-)
G227197 LOC102293685,LOC104918784,LOC102194436 other upstream 784328 10980198 ~ 10981259 (-)
hgfa LOC103365344,LOC104958230 other upstream 1262711 11458581 ~ 11482578 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other upstream 1421485 11617355 ~ 11676832 (-)
cracr2ab LOC102301749,LOC103365394 other upstream 1641378 11837248 ~ 11848941 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnay-gua-287 NA coding NC_048585.1 CM023239.2 59859016 ~ 59859102 (+)
striped catfish (Pangasianodon hypophthalmus) trnay-gua_20 NA coding NC_047623.1 CM018569.1 11822377 ~ 11822464 (-)
mexican tetra (Astyanax mexicanus) trnay-gua_20 NA coding NW_019171900.1 APWO02001498.1 190219 ~ 190305 (-)
mexican tetra (Astyanax mexicanus) trnay-gua_54 NA coding NW_019171900.1 APWO02001498.1 212556 ~ 212642 (-)