trnal-cag_24


Basic Information

Item Value
gene id trnal-cag_24
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19452946 ~ 19453028 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_1502
GTCAGGATGGCCGAGCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTCCTCTGGAGgcgtgggttcgaatcccactTCTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1502 True 83 tRNA 0.61 1 19452946 19453028

Neighbor

gene id symbol gene type direction distance location
trnal-cag_23 NA coding downstream 396 19452469 ~ 19452550 (-)
trnal-cag_22 NA coding downstream 873 19451988 ~ 19452073 (-)
trnal-cag_21 NA coding downstream 4800 19448064 ~ 19448146 (-)
trnal-cag_20 NA coding downstream 5843 19447021 ~ 19447103 (-)
trnal-cag_19 NA coding downstream 9632 19443232 ~ 19443314 (-)
rpap3 NA coding upstream 42391 19495419 ~ 19504306 (-)
lrig3 lrig3 coding upstream 93598 19546626 ~ 19569057 (-)
LOC120553212 fam19a2,LOC103364248 coding upstream 280038 19733066 ~ 19806755 (-)
LOC120553419 timp3,LOC103152565 coding upstream 530451 19983479 ~ 20000522 (-)
cep83 cep83 coding upstream 806997 20260025 ~ 20272144 (-)
G228855 NA non-coding downstream 38344 19414330 ~ 19414602 (-)
G228839 NA non-coding downstream 77151 19375459 ~ 19375795 (-)
G228838 NA non-coding downstream 77585 19374204 ~ 19375361 (-)
G228836 NA non-coding downstream 87418 19365124 ~ 19365528 (-)
G228835 NA non-coding downstream 88530 19364156 ~ 19364416 (-)
G228851 NA non-coding upstream 27793 19480821 ~ 19481084 (-)
G228869 LOC104924522 non-coding upstream 28196 19481224 ~ 19481477 (-)
G228870 NA non-coding upstream 29144 19482172 ~ 19482617 (-)
G228871 NA non-coding upstream 29839 19482867 ~ 19483153 (-)
G228880 NA non-coding upstream 46210 19499238 ~ 19499610 (-)
sox5 sox5 other downstream 182610 19028609 ~ 19270336 (-)
LOC120553633 slc2a13,LOC103369283 other downstream 629856 18738396 ~ 18823090 (-)
gramd4a gramd4,LOC103376144 other downstream 1031539 18363259 ~ 18421407 (-)
tafa5a fam19a5,LOC103356475,LOC102793695 other downstream 1351951 17830616 ~ 18100995 (-)
G228465 NA other downstream 2150748 17295122 ~ 17302198 (-)
G228934 fam19a2,LOC103364248 other upstream 280074 19733102 ~ 19807098 (-)
etv6 etv6 other upstream 353786 19806814 ~ 19839350 (-)
rerg rerg other upstream 613867 20066895 ~ 20122393 (-)
cdk17 LOC104930593 other upstream 848064 20301092 ~ 20354627 (-)
G229199 NA other upstream 1504629 20957657 ~ 20958220 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnal-cag-5 NA coding NC_048573.1 CM023227.2 16013536 ~ 16013618 (-)
tiger barb (Puntius tetrazona) trnal-cag_34 NA coding NC_056718.1 CM032087.1 10932562 ~ 10932644 (-)
mexican tetra (Astyanax mexicanus) trnal-cag_54 NA coding NW_019172899.1 APWO02000093.1 212075 ~ 212157 (-)