XLOC_005037


Basic Information

Item Value
gene id XLOC_005037
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 250081 ~ 279335 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011050
cttctgcagagctcggttgtaacgagtgcttatttgagttaccattgctatcagctggaaccagtctggccattctcctccagtcttgttgatatgattatacacgctACTACTGGTACATGTTAGCTTCTACATACGGTCGGTCTCAAAATGGAAGGAATTTGAATCCGATTTATACCATCAGGAAACTTATAAAAAGACTTAGTGTGattatatcagcccaatatggCTGTGGACAGACCACACTGcacacagctctgtccaaacagctcacaGAAGATGGTTTTCATCATAGCTGCCCTGTAAATAAGCTTAGACGGCTTGATTTGTGCAGCTGTTTATACCTCCACCTTCCGTAATCCAGCCCTCGCCCAGCCAATCACAAGAGGCAGCTGATTACAGTGGGCGGAGCTCTGACCTGCTGCGGAAGGTGATCAGTGGAGGGACAAACTCACACCGGACCTGAGGGAAACACCACAACAAACACAGACTACAGCAGTGatgctcaaccctgctcctggagatcgaccttcctgcaaccctgattagacacacctgaaccaatgaaTGATGACCTGAACAGCGCTTGATACtgacaggcaggtgtgtttgatgtgggctgcaactgaaatctgcaggaagggacagggttggtcacgcctgGAGTACAGCCATGCTGCTCGCCACACTATCTGCTGTGATGTTTGCTGAACTCTCACACGATGATTCTGCCATCAGAAACACCCTGAAAGCGAGGCTGAGGACGGTCTGACCTGATGAAgatgataaatattaataatgaatacaCCGCTGCTCTGTGAAGACGCTGCCTCAGCGATTGCTGAAGAGATGTGAACACTCCACTGAGGAAATGCAGCTTTCCATCACAGCATTAGATGACGCTTCGCTTTCAGTATATTTATGTCACAATATCATTACGCTTCTGATCAAATAAGCTCCGCAGAGGAGGCTGAGGTGTTCAGAAGTCCTGCTGTGTGTCTCTGATCTTGAACTGCTGGATGTTTTGAGCATTATGGAGCGGCTGATGCTGTTCTCTAGTGTTTGCACTGGAGCAGAAGCTGGGTTCACAGC
>TCONS_00010788
ATTCAGAATGCATTGAACAAGTGTGGAAATATTAACACGCTTCACACTACAGGACGCGTTTATTCTCATTACATTTAAAGTTTTCTCAAAAATGCTGCAGAAGTTTCCAAAGCTAATATAAGCTTGGCCTGTGTGTTTTATTGAGTTTCCCTGCTGCTCTTATGTCACTGACACCGGGAACTAATGGACAGAACTGCACTAGTTTCATCATGAGGGTTTTGGTGGAGGAGTTCTCCTTATCTGTGCTGTTTTTATCTGCTGTGATGTTTGCTGAACTCTCACACGATGATTCTGCCATCAGAAACACCCTGAAGTAAGGAATAATGTGCAATAAATATCATCAGACATTTAAAGACTGGGATGTGAGTGTGGTTGTT

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0009799 specification of symmetry biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0060897 neural plate regionalization biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0035295 tube development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0140110 transcription regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011050 False 1092 lncRNA 0.48 4 250081 279335
TCONS_00010788 True 377 lncRNA 0.40 2 253007 276795

Neighbor

gene id symbol gene type direction distance location
XLOC_005036 CABZ01102039.1 coding downstream 37238 204095 ~ 212843 (-)
XLOC_005035 NA coding downstream 69272 180200 ~ 180809 (-)
XLOC_005034 NA coding downstream 74562 171286 ~ 175519 (-)
XLOC_005033 dnah9 coding downstream 105005 137149 ~ 145076 (-)
XLOC_005032 FO818699.1 coding downstream 125817 118704 ~ 124264 (-)
XLOC_005039 map2k4b coding upstream 1831 281166 ~ 287633 (-)
XLOC_005040 adprm coding upstream 8773 288108 ~ 290815 (-)
XLOC_005041 pts coding upstream 33113 312448 ~ 314899 (-)
XLOC_005042 NA coding upstream 58473 337808 ~ 355555 (-)
XLOC_005043 NA coding upstream 126852 406187 ~ 408631 (-)
XLOC_005031 NA non-coding downstream 184321 64267 ~ 65760 (-)
XLOC_005057 NA non-coding upstream 793150 1072485 ~ 1085227 (-)
XLOC_005062 NA non-coding upstream 1173565 1452900 ~ 1453339 (-)
XLOC_005063 CU694266.1 non-coding upstream 1211137 1490472 ~ 1490588 (-)

Expression


Co-expression Network