trnap-agg_20


Basic Information

Item Value
gene id trnap-agg_20
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24576950 ~ 24577021 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_1528
ggctcgttggtctaggggtatgattctcgcttAGGGTGCGAGAggtcctgggttcaaatcccggaCGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1528 True 72 tRNA 0.60 1 24576950 24577021

Neighbor

gene id symbol gene type direction distance location
slc41a2b LOC103365955,LOC104923736,LOC106530824 coding downstream 11144 24508776 ~ 24565806 (-)
LOC120553465 nfyb coding downstream 201726 24365338 ~ 24375224 (-)
podxl podxl coding downstream 292241 24256783 ~ 24284709 (-)
net1 net1,LOC104963784,LOC103383002,LOC107560732 coding downstream 467377 24066409 ~ 24109573 (-)
glt8d2 glt8d2 coding downstream 691358 23868156 ~ 23885592 (-)
LOC120553455 NA coding upstream 214471 24791492 ~ 24797223 (-)
aldh1l2 aldh1l2,LOC104948869 coding upstream 220374 24797395 ~ 24826222 (-)
samm50l samm50,LOC108250208,LOC102304796 coding upstream 266371 24843392 ~ 24863709 (-)
LOC120553669 NA coding upstream 536978 25113999 ~ 25184485 (-)
rint1 rint1 coding upstream 925512 25502533 ~ 25524956 (-)
G230165 NA non-coding downstream 5632 24569302 ~ 24571318 (-)
G230121 NA non-coding downstream 91428 24482615 ~ 24485522 (-)
G230120 NA non-coding downstream 94411 24481687 ~ 24482539 (-)
G230119 NA non-coding downstream 95271 24479707 ~ 24481679 (-)
G230118 NA non-coding downstream 97294 24479094 ~ 24479656 (-)
G230170 NA non-coding upstream 43898 24620919 ~ 24680361 (-)
G230174 NA non-coding upstream 56999 24634020 ~ 24663681 (-)
G230176 NA non-coding upstream 73970 24650991 ~ 24652825 (-)
G230178 NA non-coding upstream 114044 24691065 ~ 24728022 (-)
G230221 NA non-coding upstream 361852 24938873 ~ 24997629 (-)
G229950 gdi2,LOC100708443,LOC102215003 other downstream 662258 23908556 ~ 23914692 (-)
LOC120553046 NA other downstream 712976 23858219 ~ 23863974 (-)
LOC120553170 NA other downstream 865146 23690519 ~ 23711804 (-)
G229907 NA other downstream 876752 23699697 ~ 23700198 (-)
glipr1a NA other downstream 1366453 23203768 ~ 23210497 (-)
sult4a1 sult4a1,LOC102784496 other upstream 614240 25191261 ~ 25217693 (-)
LOC120553115 NA other upstream 1018557 25595578 ~ 25601380 (-)
mkrn1 mkrn1 other upstream 1594299 26171320 ~ 26196510 (-)
G230594 mrps33 other upstream 1798671 26375692 ~ 26381365 (-)
G230730 NA other upstream 2540185 27117206 ~ 27118597 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnap-ugg-383 NA coding NW_023494071.1 JAAXML020000876.1 49601 ~ 49672 (+)
mexican tetra (Astyanax mexicanus) trnap-agg_69 NA misc NW_019171833.1 APWO02001431.1 33207 ~ 33278 (+)