XLOC_005038


Basic Information

Item Value
gene id XLOC_005038
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 262396 ~ 265201 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011051
GTTTTGATCAACACTGGTGCTATTTTCTAAAAGTTGTACTCTGATGTTGATCTGTCGCTGGAGCTCCGTTAACAGCAGTGTGTTCTGGGTCGGTTTCAGTGTAACACGAGCGGAAGAAACTCTTCCCGCGTCTCTGTTTCTGTTGGACCTCATCGACTGTCCTCAAAACTGCAGAATCTGACATCATGGCTGGCTCACAGTCCAAATATAGCTCACCAGCTCAAACCTGGGTCTAAATTTACCCTGTGATGTCATTGTCATCATGTAGAGCAGCTGCAGTCCGTCCGTCTTCCTCCAAAAACAGCGAAGCAGTTCACGTCAGGAGAATCTGAGCTGGCTTCACAATATATCGCTCAAATATAAAGCGTCATTCCTTTACAtaacatataaacacacaatcataaatatgaacacacaggtcaattgaattaactaaattggccataatgtatgtgagtgtgtgagagaatgagtatgtatgggtgtttcccagtactgggctgcagctagaagtgcatctgctgtgtaaaacatatcctggaatagttggtggttcattccactgtggtgacccctgagaagtaagggactaagccgaaggaaaatggataaatgaatatgaACCCAACACTGGACGTGAGAGCTGTTTTAAACTGACATTCCAGAGCGGTAATGTACTGTAACTGTGCTGACTGTAACTAGCAGTGTCCGTATATCACAGCACTCTACAATAAAGTCAGATATTTCCTCAGTATCTGGACAGTGAATCAGTCCTGGGTTGATTCTGCTGTGTGTAGATTGTTTTAGTGTAAATGTCAGCGTCCGTCAGTAAAGGCATTGAGTGAACTCAACAGGGAACACCGCTTCAGCTGTCTGTCGGCCTCAAATCATTAACTCTGGCGTGTGATTTTTCTAAAGCTTGTAAAACCAAACAGTCTGTCAGATTTTCTCAGTGTCGGTGAACAGACCAGACTTTACCTTCAttacagtgaacacacacacacacacacacacacacacacacacttctgaacGCTGCGTTTCATATCAGGACAGACGCTGTGGACACACTCCAGAATCTGCTGCTTGTCTAGTAAGAAACGATCGCATCATTCTGCATTTATATTATAGTAATATAGTATGGTGCTAACCCAGACAGACAGTTGGTGGATGCGATTGTAAGAATGGTTTGGAGAACTGCAGTCGTCATCAGTGTGTTTCTTCTGCATTGTTACTGTGAGGTAGGACTGCACAAAATACGAATTAACTACTGTCAATTCAGCTTATatagttcccctatagcgcatgggtttggactgtggaggagcacccggaggaaacccacaccaacacgaggagaacatgcaaactccacacagaaacaccaactgacccagccgagactcaaaccagagaccttcttgctgtgaggccacagtgataaTCACTAAGCCACTGTGTGCAACAGactaattctatttttgaatactatttaggacaaatacacacagacagatgTGAATTGTGATGAAGCAACAGCTTTTttgtcatatacacacacacacacacacacacacacacacacaaacacacacacacagtgtatcCAAAAAGTGTTACGCTTTACATTTTCCACAtactacagccttattccaaaatgcattcaattgattgatttcctcaacattctacacacaatcccccataatgatgatgtgaaaaagagtttttgaaattgttgaaaatttattaaaaataaaggctgATAAATCAGATGTGCATCCGTATTCTCAGGCTTTGCTCAGTactctgttgatgcacctttggcagtgaGTTCAGCCTCAGGTCTTGTTGAATATGACGCCACAGGCTcagcacacctgtctttgggaatttctgcccgttcctctttgcaggaTCTCTCTATATGGTTTGGGTAATGGAGAACATTTTGACCAAGACTTCTTCAAAATCCCGATGGGTTATAGAAATGAGCAGTTCTTCTGGAATGAGCGCTGCTGCTGCTGGGAAAGACGTTTCAAACGTCACGATGATCTAAACGAAGAGTGAAATGAACAAAAGGTTCTGGTTCCTGTAGTGTGAGATTTCTCAGGAATGTTCCGCATGTAATCTCACCGCCGTGATTTCTGCCTCAGAGCGCTGTGATGCATCCACTCAGATCTGCTGGAAATGACAGAACAGTGCAAATATTCCTGAAGAGGGACGCCAGAGTTCTGCtgcgagtgtgtgagagtgtgttcaGTGCTGGACGCGGCAGGAGACCAGACACACACCACTGACTGGAGGAAGAGAACACTGAGAGAACACTGCCTGACAGACTCGCCAAACATCCACACGTCCAGTCTTTTACAGAGAAGAAATCTAGTGCGCACTACAGCCTTGTTCTTATCATCTAGTTAACTGGAAGCACATGCTGTAAGTGTTCTTCAGCGGAGACTCTTTCATGTAGTCTGACAGTCGTGCTCTTCCTCCTCcagcttcagtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgatatatgaTAACGCAGTAAATATTCTGCATGTGCATCAGAGATGAAGGCCTCCTCCAGCACAGCTCTGTTGTTTCAGTCGTGTCGTTCTTCGCTTGTTTTGCTTC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011051 True 2643 lncRNA 0.44 2 262396 265201

Neighbor

gene id symbol gene type direction distance location
XLOC_005036 CABZ01102039.1 coding downstream 49553 204095 ~ 212843 (-)
XLOC_005035 NA coding downstream 81587 180200 ~ 180809 (-)
XLOC_005034 NA coding downstream 86877 171286 ~ 175519 (-)
XLOC_005033 dnah9 coding downstream 117320 137149 ~ 145076 (-)
XLOC_005032 FO818699.1 coding downstream 138132 118704 ~ 124264 (-)
XLOC_005039 map2k4b coding upstream 15965 281166 ~ 287633 (-)
XLOC_005040 adprm coding upstream 22907 288108 ~ 290815 (-)
XLOC_005041 pts coding upstream 47247 312448 ~ 314899 (-)
XLOC_005042 NA coding upstream 72607 337808 ~ 355555 (-)
XLOC_005043 NA coding upstream 140986 406187 ~ 408631 (-)
XLOC_005031 NA non-coding downstream 196636 64267 ~ 65760 (-)
XLOC_005057 NA non-coding upstream 807284 1072485 ~ 1085227 (-)
XLOC_005062 NA non-coding upstream 1187699 1452900 ~ 1453339 (-)
XLOC_005063 CU694266.1 non-coding upstream 1225271 1490472 ~ 1490588 (-)

Expression


Co-expression Network