sumo1 (sumo1)


Basic Information

Item Value
gene id sumo1
gene name sumo1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 2489135 ~ 2494174 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU314729
TGTAGAATTCTCACAACATCAAGCTGGAGCTGCGATTgtaagctaacgctagctacatCTATTGTCAATCAATTTTAACAACACAAGCAGAGGAAAAACATGTCAGATACGGAGACAAAACCAACCAGCCAAGACGGGGGCGATAAGAAGGATGGAGAGTACATTAAATTAAAAGTGATTGGCCAGGACAGCAGCGAAATTCACTTTAAGGTTAAAATGACGACACATCTGAAGAAGCTGAAGGAGTCTTACAGTCAGAGACAGGGTGTCCCAGCAAGCACGCTAAGGTTTCTGTTTGAAGGACAGAGAATCGCAGACAACCAAACTCCGAAAGAGTTTCAAACCATCTGGATCAAAAGCGACTCTTATCAGGGCTTCCATATGTGAGGGTGTGAACAGACTGAGGCGAGGAAGAGGACAGTGGGTCTCTGGTTCTCTGAAGTGCAGGGATGCTCATGCTGTTGACCCGAGCAATAGCATTCAACGTGAGTGTTACACCCAAATATACATAGACAAACATTATTGTGGGTATTTTTGTCCTGTCTTTTTGGGGTGTCAGCTTAAACAAATCATGCTATCAAGGAACAGTCTGCATTCAAGTAATAGTTCAcccaaaaatgtaaactgttacTGTCTAATCTCTTATTACAGCCGCAAAACAAAGTAAATTATCACGAGACGATACCACACAGTTAGTGTACAGCTTTGTGTCCGctttcttaaaataaaataattaaaccagaaaaaaatgacagtaAAGTCTTCAAACAGCCCCCTACTGTATAATTTTAGTGTTCTGCACTTGGGGACCAAAAACTTTAATATTTACTTGTTTATCTTCTCGATTTTTAGCAATTGCTCTGCACCCTGTTATGAAAGATTGTATTAGCCAATGACATGCGAGTACACATGGACTCTGTGGCAAAAAACACAAAGTCCTTCTGGCCTCTTAAGTTTGAGGAGGCTGAAGCAAAGCTGTGTCTGCTGGATCAGATGTCAGAAACAGAGTTTTGGATGCACTATGCCTTTAAATCTGGGTTGGACTAGCAGTGATGCAAACACTGGATTCATCTTCTATTTCCCTTGTATAAGACATTGAAAAATATTGCTTGCACCCCTGTTCATTTTGTTGACTgaggagtagggctgggcgatatggagaaaatcaaatatcacgatatttttgaccaagtACCTCGATATCgaaacaatattgtagtgttgactattggtgctttcacaaaatatttacacaaggagagtttagataaataatcaccagtaatatggatataatgactaagtgggtaaaggcaaataatagaacagctacaacagtctgctaagttcagaaaatgacatcactttactgtaatgcagcctttataaccaggaaaagacaccacttatgccatattacaatattaccatatccaaaatctaaggatatctagtctcatgtcacaatatcgatatattgcccagctctactgaGGCGTTTGAAAAACTAAGTTAGGCATCAAAGAAACACGAGGCAGTTCAATTCACACATCTTGTATGTAACATTCAGGGCCTTTCACAGGCGGTCTTACCAGAGAGAGGGTTCACTTTACCACTATGTGCTCATCAACATTACTAGGCACATTGTCAACATTTGTCTCTGTAGATTTGGATAATTTCATTTACAATCACTATGTGccattttaaaaaaactaaataaaatgcagCCATCAGGAAATTGTAAAATGATATTTGACCTGCAAAGGTAATGAGATTTTAAACACATTGTTTTAAATAGGTAATTGTGCTTAACTTGTATGTTGTATTTAGTATTAGTGTGTTTGAATGCTATCTCATATGAATCttcagtgtctttttttttttatttgagagaTTCAGTAATGATATATCTAAATGTATACCAGATATGGAAATATTTTGCTCGCTGACAGTCGCACAGTATTTTAAACTCAGATGATTCTGTCCTGCAGCAGTTTGTTAATGGAAAAATCTTAAAATGGTCTATGAACAGTGACCGGTTATACTTTGGTGTCAGCGTTTGTTTTTGGAATTAAACTCTGGATCTGTGTGCTGTATGCCGTTCTTCAAGAAGGCTAATGAGCTGCGCTCAAACTGTGGCGTCTGACATTAGTGTGACGAGATAAACGACAAGATATGTGCATGCTGGAGATGCTCAACTCCCGAAGGATGAAATAACCAACAACAAAACACGTCTGTTGACAGTCTGGTTATTTCAGTCTTCACAAACACCCATAATGCCCGGTAAAAGCTGCAATGGATGATGGTTGAACTGCACCTCTGGGGCACTTTTGCTTTCAGCGCACACAATACAAAATTCAGAAGCATGTCAGCTGTCGTTACTGCCATACAATTGGTTTTTTCAACATCCATAAACCTCAGAGTAGCAACTTTAAATCAAGTAgttctccttttttaaatgaactgacGCAGTGGGTCAGTGATCATAGACCATCAAATGGTTGTGGTTTCCCAGAGGTGTCCTTAAAAAGTTAAGATTTCCTCCAttggatttttttcaacctaCCTGACTGTTTATAATTTTTCCTCCGTGCGCCAGTGAACAGCTCGGGTGAACTCCACCcaaccccccccacctccccccccaGGGCTGTGTTTTTGATCTCAGTGAGGTGATGGGACTGTTCATCATTAGAGGAACGTTGATACAGATGGTTTGAAATTTTGCAGATgagc
>XM_039793130.1
TTCCGGTCGATGTAGAATTCTCACAACATCAAGCTGGAGCTGCGATTgtaagctaacgctagctacatCTATTGTCAATCAATTTTAACAACACAAGCAGAGGAAAAACATGTCAGATACGGAGACAAAACCAACCAGCCAAGACGGGGGCGATAAGAAGGATGGAGAGTACATTAAATTAAAAGTGATTGGCCAGGACAGCAGCGAAATTCACTTTAAGGTTAAAATGACGACACATCTGAAGAAGCTGAAGGAGTCTTACAGTCAGAGACAGGGTGTCCCAGCAAGCACGCTAAGGTTTCTGTTTGAAGGACAGAGAATCGCAGACAACCAAACTCCGAAAGAGCTGGGGATGGAGGACGAGGACGTCATCGAGGTTTATCAAGAACAGACTGGCGGACTTTGGAATGATTAAACTCCTgcatttctaattttttttttttcttcttattttgtattttattttgtatgtatgtacgtattTTTGTTCAGTTTCAAACCATCTGGATCAAAAGCGACTCTTATCAGGGCTTCCATATGTGAGGGTGTGAACAGACTGAGGCGAGGAAGAGGACAGTGGGTCTCTGGTTCTCTGAAGTGCAGGGATGCTCATGCTGTTGACCCGAGCAATAGCATTCAACGTGAGTGTTACACCCAAATATACATAGACAAACATTA

Function

symbol description
sumo1 Predicted to enable protein tag and ubiquitin-like protein ligase binding activity. Acts upstream of or within chordate embryonic development and definitive hemopoiesis. Predicted to be located in nuclear stress granule. Predicted to be active in nucleus. Predicted to colocalize with PML body. Is expressed in brain; cranial neural crest cell; digestive system; eye; and pectoral fin bud. Human ortholog(s) of this gene implicated in orofacial cleft 10. Orthologous to human SUMO1 (small ubiquitin like modifier 1).

NR:

description
small ubiquitin-related modifier 1

GO:

id name namespace
GO:0009790 embryo development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU314729 True 2736 lncRNA 0.39 5 2489145 2494174
XM_039793130.1 False 678 mRNA 0.43 5 2489135 2491960

Neighbor

gene id symbol gene type direction distance location
desmb des,LOC103366968,LOC101472777 coding upstream 71583 2407895 ~ 2417552 (+)
LOC120554738 si:ch211-114n24.6,LOC108255233,LOC101061790,LOC102793273,LOC102213860 coding upstream 132787 2353648 ~ 2356348 (+)
LOC120554740 si:ch211-114n24.6,LOC107581392,LOC107659977,LOC107659949,LOC108436424,LOC103034569,LOC102213574 coding upstream 136776 2350544 ~ 2352359 (+)
bin1b bin1,LOC100703344,LOC102312482,LOC101065659,LOC103154120,LOC105916432,LOC107384639,LOC102793948,LOC103389239,LOC108251630 coding upstream 139693 2328511 ~ 2349442 (+)
LOC120554727 gp91phox,LOC107384631,LOC103389690,LOC100705711,LOC103372494 coding upstream 231108 2245711 ~ 2258027 (+)
LOC120554571 NA coding downstream 94836 2589010 ~ 2647401 (+)
gpd2 gpd2 coding downstream 183168 2677342 ~ 2703611 (+)
LOC120554407 LOC103139210,LOC108250327,LOC102796576,LOC106535979,LOC101488115,LOC106920547,LOC106529907,LOC102199060,LOC102308458 coding downstream 261701 2755875 ~ 2781916 (+)
LOC120554411 lrrc3,LOC103365961,LOC100701732 coding downstream 293252 2787426 ~ 2790673 (+)
trnar-ccu_18 NA coding downstream 315338 2809512 ~ 2809584 (+)
G231940 NA non-coding upstream 40698 2446831 ~ 2448437 (+)
G231935 NA non-coding upstream 52872 2423930 ~ 2436263 (+)
G231910 NA non-coding upstream 82354 2362893 ~ 2406781 (+)
G231573 NA non-coding upstream 202176 2270053 ~ 2286959 (+)
G231574 NA non-coding upstream 206242 2281219 ~ 2282893 (+)
G231955 LOC102192810 non-coding downstream 7050 2501224 ~ 2503301 (+)
G231961 NA non-coding downstream 36700 2530874 ~ 2532587 (+)
G231908 LOC106524675,LOC101166777,LOC104929096,LOC107396539,LOC106920551,LOC102795669,LOC102310614 non-coding downstream 159795 2653969 ~ 2658485 (+)
G231981 NA non-coding downstream 202305 2696479 ~ 2696873 (+)
LOC120554414 NA non-coding downstream 212117 2706291 ~ 2710161 (+)
G231514 LOC101480717,LOC102290810,LOC102794459 other upstream 390386 2096875 ~ 2098749 (+)
G231461 LOC107384560,LOC103366582 other upstream 697277 1716411 ~ 1791858 (+)
G231423 agap1,LOC101478076,LOC102798364,LOC103389825 other upstream 775733 1399732 ~ 1713402 (+)
LOC120554068 agap1,LOC101478076 other upstream 968071 1468168 ~ 1521064 (+)
G231428 NA other upstream 992528 1487274 ~ 1496607 (+)
G232031 NA other downstream 405639 2899813 ~ 2906486 (+)
LOC120554435 NA other downstream 1059404 3553578 ~ 3590879 (+)
dock9b LOC103359855 other downstream 1846320 4340494 ~ 4399319 (+)
G232425 NA other downstream 1922990 4417164 ~ 4418102 (+)
scn1lab NA other downstream 2238288 4732462 ~ 4772995 (+)

Expression


Co-expression Network