LOC120554422


Basic Information

Item Value
gene id LOC120554422
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 2941245 ~ 2945534 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU314915
gaaagaaagaaagaaagcggAACCGAAGTGCGGGTATCGTTGCACCCCTAtggttatatatatgtcaatggttgcaCCACGATGCCCACGTGACGGGAACCTCACTCTTCAATGAGAGCTCAGCAACCAGCTCTTCTTGGAGAGAGGAGCTGCGATTTCTCCTCTTGCAAGAGTCCAAGATATCAGCAAGTCCAAGAATGATGTACCAGTACAGCCCAACTTGAATATATTCCCAACCATTTTGATGGGGGGCAGAAGACGGAGCTTCAGGCCAAACTGTCCCCTCCCCAGGCCAGCTGCAGAACAGGGTCCAGAGCGTCGGGAACTTCTCCACGTTGTCACGTTGCCTACGTCAGCCCCACCATCAAGGGCTCGGCCCCCACCAGCCTCCAGTGTCTGAACATCAGCGGCTGGGGAGCAGCGGGGTCAACACTGGCATCCCTATGCTGTGTGGAGCAGGGGCGCCGACTTCCACCACAAGCGAAATATCTAATAATATtttcctttacataattaaagacatttgcaccataaattgagGCAGAAAAGGCACACATTTTTACCACAATCCAGGGTATGAAGTTTTTTATATTCCAAAAATTTCAATTAGGCTCAAAAGTGGATGACCCAAGACatgacaagacatttgaggacgtcatttttcactattttctgacattttatagaccaaacaactaatcgagaaaataatcgacagattaatggaaaataataatcgttagtttcagccctaattGCTAGATTAGAAAAGACTTAGAAAACTTTAATGTCCCCGAGAGGCCACTTGTTGTCCAGTACAGGCATATATGACACAtaatccacaacacaaacattaaaCCAGACATCTCCAGCACTGTTTATCTAATATATAACCTACACACATCAATAATAGAAGACAGTAAAAAAGGAGTATGTTGCACTTCCCTAAAAAGGCCTAatgtcataaataaatgaaaccaTGTGAAGTACTGTGCAGTAGTAGAACATGTTTGTGCTCTCTTATAAAGGTTGTCAGATATGCCTAATTGACCAttcctttattattttctgcagtTTCCAAAGAGCCTGTCCACCCTCAGTGTCCTTCGGGACAGCAGCTGGAGGGACGGCTGCtactgatggatggatggactggtGGACACCCCGCTGGCTCGGGTAACTCGCCACACCTCAACATAAAGCTTTTCCTTGGGGACGTTTTGAATGGGTTTGACCAAAAAGTAACTGTAACCTTAAATCTGCTTCAGTCCTGCATACAAGAGTTCTCCAAAAGGGCCACAAGTGAACTGACCTCTCATGTCATCCATTGAATTCTATGCAGAATTATTTCGGGGAAGGCGGgatatcttttatttatttttttttctggatttGAGTGGATGCAGATCAGGTCTAATTTTACCGACAGCTTGATGCTCCTGAGTTTGGTCCGTGCCAAGGGGGGAGTTGTTCCCTGTTGCTCTTGTGCAATAAACCACTGGCTGTAGGGTACCAGTAGTACTAACCTGCTAAAGAGGCCTGCcactttttataaaaaaagagcctcacaatactgtatgtatttatatatttattttaaatacctTTTTTTAACTAATCAGGTTTTTTCCCTCTGGCAACAAGCGCCAAAGATGCTGCTAAAATGAATCCGTCCCTGTTGGTTTGGGCACATTTGGTCTCATTTTTACAAGGTCgactgtatgtatctgtgtgcaAAGCTTACTATTAAATGgctatttatataaatatatatattgatgcAATATTATTGAATTTGAAATGTGAGCAAAAGGaaaaagtgtgaatgtgtgtacaaACTAGTCTCACCATGGTGTCACTAAACTGTGCATATTAACTCTCTGAAATAGTTTAAGGCCCTATAAGGGATCTGTTCTTGTTGCACTTTGTATAAATCTCTGAACTTACTGATGTTCTCATCTTCTGTTTACTAATGTTTGCACTTCCTTTTTATTCGTGGAGAAGATTTCAGTTCTACACGGCATAATGTAGCACTGTTTTTGTAATATTTggcttgtgtttttaaatggccGTCACTATGGCACATTTCACTAAATCCTGAGCCTTTTGTTCCTGTGATGAGCTGAATGAgtgaaacattttaataaaactcactgaatcaaatatgacttttttttcctgagTACTTTATGTTGAATTTAAACCTGCAACTTTGAACTAAATAGTAAACCAGTTTAAATATGCACTGCCTTTGCTTTAAAAAGCAATATAAC
>TU314919
gaaagaaagaaagaaagcggAACCGAAGTGCGGGTATCGTTGCACCCCTAtggttatatatatgtcaatggttgcaCCACGATGCCCACGTGACGGGAACCTCACTCTTCAATGAGAGCTCAGCAACCAGCTCTTCTTGGAGAGAGGAGCTGCGATTTCTCCTCTTGCAAGAGTCCAAGTCCCCTCCCCAGGCCAGCTGCAGAACAGGGTCCAGAGCGTCGGGAACTTCTCCACGTTGTCACGTTGCCTACGTCAGCCCCACCATCAAGGGCTCGGCCCCCACCAGCCTCCAGTGTCTGAACATCAGCGGCTGGGGAGCAGCGGGGTCAACACTGGCATCCCTATGCTGTGTGGAGCAGGGGCGCCGACTTCCACCACAAGCGAAATATCTAATAATATtttcctttacataattaaagacatttgcaccataaattgagGCAGAAAAGGCACACATTTTTACCACAATCCAGGtTTCCAAAGAGCCTGTCCACCCTCAGTGTCCTTCGGGACAGCAGCTGGAGGGACGGCTGCtactgatggatggatggactggtGGACACCCCGCTGGCTCGGGTAACTCGCCACACCTCAACATAAAGCTTTTCCTTGGGGACGTTTTGAATGGGTTTGACCAAAAAGTAACTGTAACCTTAAATCTGCTTCAGTCCTGCATACAAGAGTTCTCCAAAAGGGCCACAAGTGAACTGACCTCTCATGTCATCCATTGAATTCTATGCAGAATTATTTCGGGGAAGGCGGgatatcttttatttatttttttttctggatttGAGTGGATGCAGATCAGGTCTAATTTTACCGACAGCTTGATGCTCCTGAGTTTGGTCCGTGCCAAGGGGGGAGTTGTTCCCTGTTGCTCTTGTGCAATAAACCACTGGCTGTAGGGTACCAGTAGTACTAACCTGCTAAAGAGGCCTGCcactttttataaaaaaagagcctcacaatactgtatgtatttatatatttattttaaatacctTTTTTTAACTAATCAGGTTTTTTCCCTCTGGCAACAAGCGCCAAAGATGCTGCTAAAATGAATCCGTCCCTGTTGGTTTGGGCACATTTGGTCTCATTTTTACAAGGTCgactgtatgtatctgtgtgcaAAGCTTACTATTAAATGgctatttatataaatatatatattgatgcAATATTATTGAATTTGAAATGTGAGCAAAAGGaaaaagtgtgaatgtgtgtacaaACTAGTCTCACCATGGTGTCACTAAACTGTGCATATTAACTCTCTGAAATAGTTTAAGGCCCTATAAGGGATCTGTTCTTGTTGCACTTTGTATAAATCTCTGAACTTACTGATGTTCTCATCTTCTGTTTACTAATGTTTGCACTTCCTTTTTATTCGTGGAGAAGATTTCAGTTCTACACGGCATAATGTAGCACTGTTTTTGTAATATTTggcttgtgtttttaaatggccGTCACTATGGCACATTTCACTAAATCCTGAGCCTTTTGTTCCTGTGATGAGCTGAATGAgtgaaacattttaataaaactcactgaatcaaatatgacttttttttcctgagTACTTTATGTTGAATTTAAACCTGCAACTTTGAACTAAATAGTAAACCAGTTTAAATATGCACTGCCTTTGCTTTAAAAAGCAATATAAC
>XR_005638426.1
gaaggaaagaaagaaagaaagaaagaaagaaagaaagaaagcggAACCGAAGTGCGGGTATCGTTGCACCCCTAtggttatatatatgtcaatggttgcaCCACGATGCCCACGTGACGGGAACCTCACTCTTCAATGAGAGCTCAGCAACCAGCTCTTCTTGGAGAGAGGAGCTGCGATTTCTCCTCTTGCAAGAGTCCAAGATATCAGCAAGTCCAAGAATGATGTACCAGTACAGCCCAACTTGAATATATTCCCAACCATTTTGATGGGGGGCAGAAGACGGAGCTTCAGGCCAAACTGTCCCCTCCCCAGGCCAGCTGCAGAACAGGGTCCAGAGCGTCGGGAACTTCTCCACGTTGTCACGTTGCCTACGTCAGCCCCACCATCAAGGGCTCGGCCCCCACCAGCCTCCAGTGTCTGAACATCAGCGGCTGGGGAGCAGCGGGGTCAACACTGGCATCCCTATGCTGTGTGGAGCAGGGGCGCCGACTTCCACCACAAGCGAAATATCTAATAATATtttcctttacataattaaagacatttgcaccataaattgagGCAGAAAAGGCACACATTTTTACCACAATCCAGGtTTCCAAAGAGCCTGTCCACCCTCAGTGTCCTTCGGGACAGCAGCTGGAGGGACGGCTGCtactgatggatggatggactggtGGACACCCCGCTGGCTCGGGTAACTCGCCACACCTCAACATAAAGCTTTTCCTTGGGGACGTTTTGAATGGGTTTGACCAAAAAGTAACTGTAACCTTAAATCTGCTTCAGTCCTGCATACAAGAGTTCTCCAAAAGGGCCACAAGTGAACTGACCTCTCATGTCATCCATTGAATTCTATGCAGAATTATTTCGGGGAAGGCGGgatatcttttatttatttttttttctggatttGAGTGGATGCAGATCAGGTCTAATTTTACCGACAGCTTGATGCTCCTGAGTTTGGTCCGTGCCAAGGGGGGAGTTGTTCCCTGTTGCTCTTGTGCAATAAACCACTGGCTGTAGGGTACCAGTAGTACTAACCTGCTAAAGAGGCCTGCcactttttataaaaaaagagcctcacaatactgtatgtatttatatatttattttaaatacctTTTTTTAACTAATCAGGTTTTTTCCCTCTGGCAACAAGCGCCAAAGATGCTGCTAAAATGAATCCGTCCCTGTTGGTTTGGGCACATTTGGTCTCATTTTTACAAGGTCgactgtatgtatctgtgtgcaAAGCTTACTATTAAATGgctatttatataaatatatatattgatgcAATATTATTGAATTTGAAATGTGAGCAAAAGGaaaaagtgtgaatgtgtgtacaaACTAGTCTCACCATGGTGTCACTAAACTGTGCATATTAACTCTCTGAAATAGTTTAAGGCCCTATAAGGGATCTGTTCTTGTTGCACTTTGTATAAATCTCTGAACTTACTGATGTTCTCATCTTCTGTTTACTAATGTTTGCACTTCCTTTTTATTCGTGGAGAAGATTTCAGTTCTACACGGCATAATGTAGCACTGTTTTTGTAATATTTggcttgtgtttttaaatggccGTCACTATGGCACATTTCACTAAATCCTGAGCCTTTTGTTCCTGTGATGAGCTGAATGAgtgaaacattttaataaaactcactgaatcaaatatga
>XR_005638427.1
aagaaggaaagaaagaaagaaagaaagaaagaaagaaagaaagcggAACCGAAGTGCGGGTATCGTTGCACCCCTAtggttatatatatgtcaatggttgcaCCACGATGCCCACGTGACGGGAACCTCACTCTTCAATGAGAGCTCAGCAACCAGCTCTTCTTGGAGAGAGGAGCTGCGATTTCTCCTCTTGCAAGAGTCCAAGGTAAGCAGAACGTATCATCTCATATCAGCAAGTCCAAGAATGATGTACCAGTACAGCCCAACTTGAATATATTCCCAACCATTTTGATGGGGGGCAGAAGACGGAGCTTCAGGCCAAACTGTCCCCTCCCCAGGCCAGCTGCAGAACAGGGTCCAGAGCGTCGGGAACTTCTCCACGTTGTCACGTTGCCTACGTCAGCCCCACCATCAAGGGCTCGGCCCCCACCAGCCTCCAGTGTCTGAACATCAGCGGCTGGGGAGCAGCGGGGTCAACACTGGCATCCCTATGCTGTGTGGAGCAGGGGCGCCGACTTCCACCACAAGCGAAATATCTAATAATATtttcctttacataattaaagacatttgcaccataaattgagGCAGAAAAGGCACACATTTTTACCACAATCCAGGtTTCCAAAGAGCCTGTCCACCCTCAGTGTCCTTCGGGACAGCAGCTGGAGGGACGGCTGCtactgatggatggatggactggtGGACACCCCGCTGGCTCGGGTAACTCGCCACACCTCAACATAAAGCTTTTCCTTGGGGACGTTTTGAATGGGTTTGACCAAAAAGTAACTGTAACCTTAAATCTGCTTCAGTCCTGCATACAAGAGTTCTCCAAAAGGGCCACAAGTGAACTGACCTCTCATGTCATCCATTGAATTCTATGCAGAATTATTTCGGGGAAGGCGGgatatcttttatttatttttttttctggatttGAGTGGATGCAGATCAGGTCTAATTTTACCGACAGCTTGATGCTCCTGAGTTTGGTCCGTGCCAAGGGGGGAGTTGTTCCCTGTTGCTCTTGTGCAATAAACCACTGGCTGTAGGGTACCAGTAGTACTAACCTGCTAAAGAGGCCTGCcactttttataaaaaaagagcctcacaatactgtatgtatttatatatttattttaaatacctTTTTTTAACTAATCAGGTTTTTTCCCTCTGGCAACAAGCGCCAAAGATGCTGCTAAAATGAATCCGTCCCTGTTGGTTTGGGCACATTTGGTCTCATTTTTACAAGGTCgactgtatgtatctgtgtgcaAAGCTTACTATTAAATGgctatttatataaatatatatattgatgcAATATTATTGAATTTGAAATGTGAGCAAAAGGaaaaagtgtgaatgtgtgtacaaACTAGTCTCACCATGGTGTCACTAAACTGTGCATATTAACTCTCTGAAATAGTTTAAGGCCCTATAAGGGATCTGTTCTTGTTGCACTTTGTATAAATCTCTGAACTTACTGATGTTCTCATCTTCTGTTTACTAATGTTTGCACTTCCTTTTTATTCGTGGAGAAGATTTCAGTTCTACACGGCATAATGTAGCACTGTTTTTGTAATATTTggcttgtgtttttaaatggccGTCACTATGGCACATTTCACTAAATCCTGAGCCTTTTGTTCCTGTGATGAGCTGAATGAgtgaaacattttaataaaactcactgaatcaaatatga
>XR_005638428.1
ACAAATACATTTGAGTAACGTAATCAACAGGCTATCTGCCCGTGTTAAGTAGGGAGGGATGGTTAGGCAACCAAATGTAATGCACGCCCCtacgttttttcttcttctaacaGTTAGCATGAAACGAGGAAGGGACACAGCGTCCTTTTTTTGGCCCCAGGAaacaaaaaagtgagagaacagcagtgagagaaacaaatggAGGTGTTGAGAGAGTtgaggagcaggaagaggaagagctGGAGGAGTCTGGGGAGGTTGGTGAGAGAGCATGTGATGAAAGTGGGGGCTCTGACACAGAGAGGGAAATTCcagagggtgaggaggaggaagaggagggtgaGGACAGGAGGAAGAAAACctacagggacagagagaggggacagCAAGTGGATCCATGTGGATCAAGTACTGCCCCATCAGATATCAGCAAGTCCAAGAATGATGTACCAGTACAGCCCAACTTGAATATATTCCCAACCATTTTGATGGGGGGCAGAAGACGGAGCTTCAGGCCAAACTGTCCCCTCCCCAGGCCAGCTGCAGAACAGGGTCCAGAGCGTCGGGAACTTCTCCACGTTGTCACGTTGCCTACGTCAGCCCCACCATCAAGGGCTCGGCCCCCACCAGCCTCCAGTGTCTGAACATCAGCGGCTGGGGAGCAGCGGGGTCAACACTGGCATCCCTATGCTGTGTGGAGCAGGGGCGCCGACTTCCACCACAAGCGAAATATCTAATAATATtttcctttacataattaaagacatttgcaccataaattgagGCAGAAAAGGCACACATTTTTACCACAATCCAGGtTTCCAAAGAGCCTGTCCACCCTCAGTGTCCTTCGGGACAGCAGCTGGAGGGACGGCTGCtactgatggatggatggactggtGGACACCCCGCTGGCTCGGGTAACTCGCCACACCTCAACATAAAGCTTTTCCTTGGGGACGTTTTGAATGGGTTTGACCAAAAAGTAACTGTAACCTTAAATCTGCTTCAGTCCTGCATACAAGAGTTCTCCAAAAGGGCCACAAGTGAACTGACCTCTCATGTCATCCATTGAATTCTATGCAGAATTATTTCGGGGAAGGCGGgatatcttttatttatttttttttctggatttGAGTGGATGCAGATCAGGTCTAATTTTACCGACAGCTTGATGCTCCTGAGTTTGGTCCGTGCCAAGGGGGGAGTTGTTCCCTGTTGCTCTTGTGCAATAAACCACTGGCTGTAGGGTACCAGTAGTACTAACCTGCTAAAGAGGCCTGCcactttttataaaaaaagagcctcacaatactgtatgtatttatatatttattttaaatacctTTTTTTAACTAATCAGGTTTTTTCCCTCTGGCAACAAGCGCCAAAGATGCTGCTAAAATGAATCCGTCCCTGTTGGTTTGGGCACATTTGGTCTCATTTTTACAAGGTCgactgtatgtatctgtgtgcaAAGCTTACTATTAAATGgctatttatataaatatatatattgatgcAATATTATTGAATTTGAAATGTGAGCAAAAGGaaaaagtgtgaatgtgtgtacaaACTAGTCTCACCATGGTGTCACTAAACTGTGCATATTAACTCTCTGAAATAGTTTAAGGCCCTATAAGGGATCTGTTCTTGTTGCACTTTGTATAAATCTCTGAACTTACTGATGTTCTCATCTTCTGTTTACTAATGTTTGCACTTCCTTTTTATTCGTGGAGAAGATTTCAGTTCTACACGGCATAATGTAGCACTGTTTTTGTAATATTTggcttgtgtttttaaatggccGTCACTATGGCACATTTCACTAAATCCTGAGCCTTTTGTTCCTGTGATGAGCTGAATGAgtgaaacattttaataaaactcactgaatcaaatatga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU314915 True 2273 lncRNA 0.41 3 2941271 2945534
TU314919 False 1673 lncRNA 0.43 3 2941271 2945534
XR_005638426.1 False 1692 lncRNA 0.43 4 2941247 2945429
XR_005638427.1 False 1715 lncRNA 0.43 4 2941245 2945429
XR_005638428.1 False 1912 lncRNA 0.44 4 2941561 2945429

Neighbor

gene id symbol gene type direction distance location
zswim2 NA coding upstream 45390 2890550 ~ 2895855 (+)
col5a2b col5a2 coding upstream 69132 2844611 ~ 2872113 (+)
trnar-ccu_19 NA coding upstream 131205 2809968 ~ 2810040 (+)
trnar-ccu_18 NA coding upstream 131661 2809512 ~ 2809584 (+)
LOC120554411 lrrc3,LOC103365961,LOC100701732 coding upstream 150572 2787426 ~ 2790673 (+)
LOC120554431 osbpl11 coding downstream 575198 3520732 ~ 3539041 (+)
LOC120554783 LOC106527415,LOC107377197,LOC103370263 coding downstream 602695 3548229 ~ 3552016 (+)
LOC120554784 LOC106527415,LOC107377197,LOC103370263 coding downstream 633212 3578746 ~ 3581403 (+)
n6amt1 n6amt1,LOC102791235 coding downstream 657363 3602897 ~ 3604527 (+)
LOC120554447 LOC102195007 coding downstream 1172384 4117918 ~ 4120596 (+)
G231983 NA non-coding upstream 24776 2712971 ~ 2916469 (+)
LOC120554419 NA non-coding upstream 28529 2909326 ~ 2912716 (+)
G232023 NA non-coding upstream 59515 2878845 ~ 2881730 (+)
G232020 dfnb59,LOC102786563 non-coding upstream 102690 2836601 ~ 2838555 (+)
G232018 NA non-coding upstream 106042 2834465 ~ 2835203 (+)
LOC120554415 NA non-coding downstream 1162 2946696 ~ 2949292 (+)
LOC120554421 NA non-coding downstream 3906 2949440 ~ 2950429 (+)
G232046 NA non-coding downstream 28443 2973977 ~ 3030258 (+)
LOC120554423 NA non-coding downstream 320587 3266121 ~ 3266994 (+)
LOC120554428 NA non-coding downstream 369536 3315070 ~ 3355014 (+)
G232031 NA other upstream 34759 2899813 ~ 2906486 (+)
sumo1 sumo1 other upstream 447071 2489135 ~ 2494174 (+)
G231514 LOC101480717,LOC102290810,LOC102794459 other upstream 842496 2096875 ~ 2098749 (+)
G231461 LOC107384560,LOC103366582 other upstream 1149387 1716411 ~ 1791858 (+)
G231428 NA other upstream 1444638 1487274 ~ 1496607 (+)
LOC120554435 NA other downstream 608044 3553578 ~ 3590879 (+)
dock9b LOC103359855 other downstream 1394960 4340494 ~ 4399319 (+)
G232425 NA other downstream 1471630 4417164 ~ 4418102 (+)
scn1lab NA other downstream 1786928 4732462 ~ 4772995 (+)
LOC120554485 LOC103354594,LOC108245699,LOC106531295,LOC107086615 other downstream 1903104 4848638 ~ 4949089 (+)

Expression


Co-expression Network