LOC120554436


Basic Information

Item Value
gene id LOC120554436
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 3561507 ~ 3595701 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU315218
GGGGCGAATAAACAAACGACCCCGCGGTCACATTCACCGGAATGATGCTAGGAGAAAAGTAGGCATCGCTGTGAGAAGGAATATGGCGTTTGGTAtcggttttgtttgtgtttctgcaaATAGACGGTTGCAGGTGGACTGGTGTTTACATGGTCCGTGGGAGCTGGAAGTCCGCAGctgtgtggcggcTGCAGTGCTTTTATTAGTCTCCTAGCTGCAGACCTGCAGCCTCAATGGATGTCATctgggaagaagaagaggagccTTGTAGAGACCAGCTGAAGGAACATCTTCTCTGAGCTGAAGCTCTGAGATGAGTGCAGAGTTTCCGGACCACAACGGAGAAGTTCCTTCACTCCATTCATGCCTTCTTCTCTCCGTACTCACTGTATactcatagtattgtatgtcatgaaataatttaaagtaaagtaagtaataGTACGtataatgtcaaaaaaagctcAGAAAAGTCATACATAATGTCAAAAAGTGTTATTAcatagttattacattgttataacATGTATTAATGACAAAAATCTATCAAAAAGTGTTATTAcatagttattacattgttataacATGTATTAATGACCAAAACATCTATCAAAaagtgttattacacagttgtaCACAGTACATGCCATAAAAGTGGGCG
>TU315219
GGGGCGAATAAACAAACGACCCCGCGGTCACATTCACCGGAATGATGCTAGGAGAAAAGTAGGCATCGCTGTGAGAAGGAATATGGCGTTTGGTAtcggttttgtttgtgtttctgcaaATAGACGGTTGCAGGTGGACTGGTGTTTACATGGTCCGTGGGAGCTGGAAGTCCGCAGCTGCAGACCTGCAGCCTCAATGGATGTCATctgggaagaagaagaggagccTTGTAGAGACCAGCTGAAGGAACATCTTCTCTGAGCTGAAGCTCTGAGATGAGTGCAGAGTTTCCGGACCACAACGGAGAAGTTCCTTCACTCCATTCATGCCTTCTTCTCTCCGTACTCACTGTATactcatagtattgtatgtcatgaaataatttaaagtaaagtaagtaataGTACGtataatgtcaaaaaaagctcAGAAAAGTCATACATAATGTCAAAAAGTGTTATTAcatagttattacattgttataacATGTATTAATGACAAAAATCTATCAAAAAGTGTTATTAcatagttattacattgttataacATGTATTAATGACCAAAACATCTATCAAAaagtgttattacacagttgtaCACAGTACATGCCATAAAAGTGGGCG
>TU315227
TACTCTTGTCTCTCCCCTTGTCTGAGGTGTCCTACTCTTGTCTCTCCCTTGTCCTACTCTTGTCTCTTCCTTTGTCTGAGGTGTCCTACTCTTGTCTCTTCCTTTGTCTGAGGtgtcctactctggtctctTCCTTTGTCTGAGGtgtcctactctggtctctccctttctctgaggtgtcctactctggtctctccctttctctgaggTGTCCTACTCTGGTTTCTCCCTTGCTCTGAGGtgtcctactctggtctctccctttctctgagtTTTCCTACTCTGGTCTCTGCCTGTCCTTGTGTTAATACTCTCCTACTCTCTTCTTGCCTGCACTTCCTTTCCTAGCCTCTCTTTCCTATCTGGGGGGCCTATCTAAGTGCACATACGCTGATACAGAG
>XR_005638444.1
GTTGCTACTTTGGCTGTTTGGGGGCGAATAAACAAACGACCCCGCGGTCACATTCACCGGAATGATGCTAGGAGAAAAGTAGGCATCGCTGTGAGAAGGAATATGGCGTTTGGTAtcggttttgtttgtgtttctgcaaATAGACGGTTGCAGGTGGACTGGTGTTTACATGGTCCGTGGGAGCTGGAAGTCCGCAGctgtgtggcggcTGCAGTGCTTTTATTAGTCTCCTAGCTGCAGACCTGCAGCCTCAATGGATGTCATctgggaagaagaagaggagccTTGTAGAGACCAGCTGAAGGAACATCTTCTCTGAGCTGAAGCTCTGAGATGAGTGCAGAGTTTCCGGACCACAACGGAGAAGTTCCTTCACTCCATTCATGCCTTCTTCTCTCCGTACTCACTGTATactcatagtattgtatgtcatgaaataatttaaagtaaagtaagtaataGTACGtataatgtcaaaaaaagctcAGAAAAGTCATACATAATGTCAAAAAGTGTTATTAcatagttattacattgttataacATGTATTAATGACAAAAATCTATCAAAAAGTGTTATTAcatagttattacattgttataacATGTATTAATGACCAAAACATCTATCAAAaagtgttattacacagttgtaCACAGTACATGCCATAAAAGTGGGCGTAAATTATTTTTTCgtccatgaaaaaaaaattcaaaaaaaattctaatttttttttttcttaaatgagGATGTTCTCTTCCTTTGTCGGAGTTGTCCTATTCGGGTCTCTCCCTTGCTCTGAGGtgtcctactctggtctctccctttctctgatttgtcctactctggtctctccctttctctgaggTGTTCTACTTTGGTCTCTCCCTTTGTCTGAGTTGTCCTACTCTTGTCTCTTCCTTTGTCTGAGGTGTCCTACTCTTGTCTCTCCCTTTGTCTGAGGTGTCCTACTCTTGTCTCTCCCTTTGTCTGAGGTGTCCTACTCTTGTCTCTCCCTTTGTCTGAGGTGTCCTACTCTTGTCTCTTCCTTTGTCTGAGGtgtcctactctggtctctTCCTTTGTCTGAGGtgtcctactctggtctctccctttctctgaggtgtcctactctggtctctccctttctctgaggTGTCCTACTCTGGTTTCTCCCTTGCTCTGAGGtgtcctactctggtctctccctttctctgagtTTTCCTACTCTGGTCTCTGCCTGTCCTTGTGTTAATACTCTCCTACTCTCTTCTTGCCTGCACTTCCTTTCCTAGCCTCTCTTTCCTATCTGGGGGGCCTATCTAAGTGCACATACGCTGATACAGAGCTGGTCTTGAACCCGTCA
>XR_005638445.1
GTTGCTACTTTGGCTGTTTGGGGGCGAATAAACAAACGACCCCGCGGTCACATTCACCGGAATGATGCTAGGAGAAAAGTAGGCATCGCTGTGAGAAGGAATATGGCGTTTGGTAtcggttttgtttgtgtttctgcaaATAGACGGTTGCAGGTGGACTGGTGTTTACATGGTCCGTGGGAGCTGGAAGTCCGCAGctgtgtggcggcTGCAGTGCTTTTATTAGTCTCCTAGCTGCAGACCTGCAGCCTCAATGGATGTCATctgggaagaagaagaggagccTTGTAGAGACCAGCTGAAGGAACATCTTCTCTGAGCTGAAGCTCTGAGATGAGTGCAGAGTTTCCGGACCACAACGGAGAAGTTCCTTCACTCCATTCATGCCTTCTTCTCTCCGTACTCACTGTATactcatagtattgtatgtcatgaaataatttaaagtaaagtaagtaataGTACGtataatgtcaaaaaaagctcAGAAAAGTCATACATAATGTCAAAAAGTGTTATTAcatagttattacattgttataacATGTATTAATGACAAAAATCTATCAAAAAGTGTTATTAcatagttattacattgttataacATGTATTAATGACCAAAACATCTATCAAAaagtgttattacacagttgtaCACAGTACATGCCATAAAAGTGGGCGTAAATTATTTTTTCgtccatgaaaaaaaaattcaaaaaaaattctaatttttttttttcttaaatgagGATGTTCTCTTCCTTTGTCGGAGTTGTCCTATTCGGGTCTCTCCCTTGCTCTGAGGtgtcctactctggtctctccctttctctgatttgtcctactctggtctctccctttctctgaggTGTTCTACTTTGGTCTCTCCCTTTGTCTGAGTTGTCCTACTCTTGTCTCTTCCTTTGTCTGAGGTGTCCTACTCTTGTCTCTCCCTTTGTCTGAGGTGTCCTACTCTTGTCTCTCCCTTTGTCTGAGGTGTCCTACTCTTGTCTCTTCCTTTGTCTGAGGtgtcctactctggtctctTCCTTTGTCTGAGGtgtcctactctggtctctccctttctctgaggtgtcctactctggtctctccctttctctgaggTGTCCTACTCTGGTTTCTCCCTTGCTCTGAGGtgtcctactctggtctctccctttctctgagtTTTCCTACTCTGGTCTCTGCCTGTCCTTGTGTTAATACTCTCCTACTCTCTTCTTGCCTGCACTTCCTTTCCTAGCCTCTCTTTCCTATCTGGGGGGCCTATCTAAGTGCACATACGCTGATACAGAGCTGGTCTTGAACCCGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU315218 False 661 lncRNA 0.40 3 3592373 3594972
TU315219 False 624 lncRNA 0.40 3 3592373 3594972
TU315227 False 401 lncRNA 0.50 3 3561507 3595683
XR_005638444.1 True 1367 lncRNA 0.43 4 3592353 3595701
XR_005638445.1 False 1335 lncRNA 0.43 4 3592353 3595701

Neighbor

gene id symbol gene type direction distance location
LOC120554783 LOC106527415,LOC107377197,LOC103370263 coding upstream 9491 3548229 ~ 3552016 (+)
LOC120554431 osbpl11 coding upstream 22466 3520732 ~ 3539041 (+)
zswim2 NA coding upstream 665652 2890550 ~ 2895855 (+)
col5a2b col5a2 coding upstream 689394 2844611 ~ 2872113 (+)
trnar-ccu_19 NA coding upstream 751467 2809968 ~ 2810040 (+)
n6amt1 n6amt1,LOC102791235 coding downstream 7196 3602897 ~ 3604527 (+)
LOC120554447 LOC102195007 coding downstream 522217 4117918 ~ 4120596 (+)
LOC120554451 LOC103372195,LOC102795276 coding downstream 584135 4179836 ~ 4198507 (+)
nop58 nop58,LOC102781044 coding downstream 639788 4235489 ~ 4241283 (+)
LOC120554799 NA coding downstream 642826 4238527 ~ 4238610 (+)
G232254 NA non-coding upstream 2548 3558403 ~ 3558959 (+)
LOC120554433 NA non-coding upstream 22466 3505847 ~ 3539041 (+)
G232211 NA non-coding upstream 198713 3332334 ~ 3362794 (+)
LOC120554428 NA non-coding upstream 206493 3315070 ~ 3355014 (+)
LOC120554423 NA non-coding upstream 294513 3266121 ~ 3266994 (+)
LOC120554443 NA non-coding downstream 52558 3648259 ~ 3650261 (+)
G232298 NA non-coding downstream 57735 3653436 ~ 3744410 (+)
G232319 NA non-coding downstream 514422 4110123 ~ 4111860 (+)
LOC120554455 NA non-coding downstream 603136 4198837 ~ 4232080 (+)
trnam-cau_63 NA non-coding downstream 604861 4200562 ~ 4200634 (+)
G232031 NA other upstream 655021 2899813 ~ 2906486 (+)
sumo1 sumo1 other upstream 1067333 2489135 ~ 2494174 (+)
G231514 LOC101480717,LOC102290810,LOC102794459 other upstream 1462758 2096875 ~ 2098749 (+)
G231461 LOC107384560,LOC103366582 other upstream 1769649 1716411 ~ 1791858 (+)
G231428 NA other upstream 2064900 1487274 ~ 1496607 (+)
dock9b LOC103359855 other downstream 744793 4340494 ~ 4399319 (+)
G232425 NA other downstream 821463 4417164 ~ 4418102 (+)
scn1lab NA other downstream 1136761 4732462 ~ 4772995 (+)
LOC120554485 LOC103354594,LOC108245699,LOC106531295,LOC107086615 other downstream 1252937 4848638 ~ 4949089 (+)
LOC120554464 LOC103354592,LOC107380990,LOC103389749,LOC106930317,LOC103147190,LOC106960073,LOC105020031,LOC106574546,LOC108438056,LOC106575308 other downstream 1407620 5003321 ~ 5041882 (+)

Expression


Co-expression Network