LOC120554435


Basic Information

Item Value
gene id LOC120554435
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 3553578 ~ 3590879 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU315240
GCCCACGTGACGGGAACCTCACTCTTCAATGAGCGCTCAGCAACCAGCTCTTCTTGGAGAGAGGAGCTGCGATTTCTCCTCTTGCAAGAGTCCAAGATATCAGCAAGTCCAAGAATGATGTACCAGTACAGCCCAACTTGAATATATTCCCAACCATTTTGATGGGGGGCAGAAGACGGAGCTTCAGGCCAAACTGtTTCCAAAGAGCCTGTCCACCCTCAGTGTCCTTCGGGACAGCAGCTGGAGGGACGGCTGCtactgatggatggatggactggtGGACACCCCGCTGGCTCGGGTAACTCGCCACACCTCAACATAAAGCTTTTCCTTGGGGACGTTTTGAATGGGTTTGACCAAAAAGTAACTGTAACCTTAAATCTGCTTCAGTCCTGCATACAAGAGTTCTCCAAAAGGGCCACAAGTGAACTGACCTCTCATGTCATCCATTGAATTCTATGCAGAATTTTTTTCGGGGAAGGCGggatgtcttttctttttttttctggatttGAGTGGATGCAGATCAGGTCTAATTTTACCGACAGCTTGATGCTCCTGAGTTTGGTCCGTGCCAAGGGGGGAGTTGTTCCCTGTTGCTCTTGTGCAATAAACCACTGGCTGTAGGGTACCAGTAGTACTAACCTGCTAAAGAGGCCTGCcactttttatataaataaagagcctcacaatactgtatgtatttatatattaattttaaattacattttttttaactaatcaGGTGTTTTCCCTCTGGCAACAAGCGCCAAAGATGCTGCTAAAATGAATCCGTCCCTGTTGGTTTGGGCACATTTGGTCTCATTTTTACAAGGtcgactgtatgtatgtgtgtgcaaagCTTACTATTAAATGgctatttatataaatatatattgatgCAATATTATTGAATTTGAAATGTGAGCAAAAGGAaaaagtgtgaatgtgtttacaAACTAGTCTCACCATGGTGTCACTAAACTGTGCATATTAACACTTTGAAATAGTTTAAGGCCCTATAAGGGATCTGTTCTTGTTGCACTTTGTATAAATCTCTGAACTTACTGATGTTCTCATCTTCTGTTTACTAATGTTTGCACTTCCTTTTATTTGTGGGAAGATTTCAGTTCTACACGGCATAATGTAGCACTGTTTCTTTGTAATATTTggcttgtgtttttaaatggccGTCACTATGGCACATTTCACTAAATCCTGAGCCTTTTGTTCCTGTGATGAGCTGAATGAgtgaaacattttaataaaacccactgaatcaaatatga
>TU315244
gaagaaagaaagcggAACCAAAGTGCGGGTATCGTtgcaccattgacatatatataatgcacCCATAGGTTGCaccagagaatgtctaataaggtGTGAACTTCCACTCCCGGGAAAATTCTGGGTTGGTTGGGTTGCACTCTTTATGTCAATGGTTGCACCACGGTGCCCACGTGACGGGAACCTCACTCTTCAATGAGCGCTCAGCAACCAGCTCTTCTTGGAGAGAGGAGCTGCGATTTCTCCTCTTGCAAGAGTCCAAGATATCAGCAAGTCCAAGAATGATGTACCAGTACAGCCCAACTTGAATATATTTCCCAACCATTTTGATGGGGGGCAGAAGACGGAGCTTCAGGCCAAACTGGTAATATCTTCATCCATGGCTTGAGTATTCTGTCATGATGGACTCTACATATTGCTGTGCATGTAGACATTTTAGCACACCAAATGCCCcagacactgtttttgtttcaaCACCAAATGCCCcagacactgtttttgtttcaaCACCTGGTTTTAGAAACTGAAAAAAGGCAACTATGAGAGATGCGGGGCTTTCAGTGCACGCAAAGTCTGAACGACACAAGTGTGCAATGATAGCATGGAGGGATGATCAAAGAGCTGTTAGAACTGACGCAACACTAGCACATCTCCTTGACAAAGAGCACATGGAACAAGTACAAGAAAATCGGTCATACATTAAAACTGTTGTTACTTACAGCTACACAAAACAGGGGCAGGGGCGCCGACTTCCACCCCAAACACGCCACGCAGCGGCCTGCCCCGCTCCGCCTCCTTTGTTGGCACCCCAAGCTCCCCAACAGCAAGGGCCAACCAGCGCGGAGtTTCCAAAGAGCCTGTCCACCCTCAGTGTCCTTCGGGACAGCAGCTGGAGGGACGGCTGCtactgatggatggatggactggtGGACACCCCGCTGGCTCGGGTAACTCGCCACACCTCAACATAAAGCTTTTCCTTGGGGACGTTTTGAATGGGTTTGACCAAAAAGTAACTGTAACCTTAAATCTGCTTCAGTCCTGCATACAAGAGTTCTCCAAAAGGGCCACAAGTGAACTGACCTCTCATGTCATCCATTGAATTCTATGCAGAATTTTTTTCGGGGAAGGCGggatgtcttttctttttttttctggatttGAGTGGATGCAGATCAGGTCTAATTTTACCGACAGCTTGATGCTCCTGAGTTTGGTCCGTGCCAAGGGGGGAGTTGTTCCCTGTTGCTCTTGTGCAATAAACCACTGGCTGTAGGGTACCAGTAGTACTAACCTGCTAAAGAGGCCTGCcactttttatataaataaagagcctcacaatactgtatgtatttatatattaattttaaattacattttttttaactaatcaGGTGTTTTCCCTCTGGCAACAAGCGCCAAAGATGCTGCTAAAATGAATCCGTCCCTGTTGGTTTGGGCACATTTGGTCTCATTTTTACAAGGtcgactgtatgtatgtgtgtgcaaagCTTACTATTAAATGgctatttatataaatatatattgatgCAATATTATTGAATTTGAAATGTGAGCAAAAGGAaaaagtgtgaatgtgtttacaAACTAGTCTCACCATGGTGTCACTAAACTGTGCATATTAACACTTTGAAATAGTTTAAGGCCCTATAAGGGATCTGTTCTTGTTGCACTTTGTATAAATCTCTGAACTTACTGATGTTCTCATCTTCTGTTTACTAATGTTTGCACTTCCTTTTATTTGTGGGAAGATTTCAGTTCTACACGGCATAATGTAGCACTGTTTCTTTGTAATATTTggcttgtgtttttaaatggccGTCACTATGGCACATTTCACTAAATCCTGAGCCTTTTGTTCCTGTGATGAGCTGAATGAgtgaaacattttaataaaacccactgaatcaaatatga
>XR_005638443.1
GTTGCACCACGGTGCCCACGTGACGGGAACCTCACTCTTCAATGAGCGCTCAGCAACCAGCTCTTCTTGGAGAGAGGAGCTGCGATTTCTCCTCTTGCAAGAGTCCAAGATATCAGCAAGTCCAAGAATGATGTACCAGTACAGCCCAACTTGAATATATTCCCAACCATTTTGATGGGGGGCAGAAGACGGAGCTTCAGGCCAAACTGtTTCCAAAGAGCCTGTCCACCCTCAGTGTCCTTCGGGACAGCAGCTGGAGGGACGGCTGCtactgatggatggatggactggtGGACACCCCGCTGGCTCGGGTAACTCGCCACACCTCAACATAAAGCTTTTCCTTGGGGACGTTTTGAATGGGTTTGACCAAAAAGTAACTGTAACCTTAAATCTGCTTCAGTCCTGCATACAAGAGTTCTCCAAAAGGGCCACAAGTGAACTGACCTCTCATGTCATCCATTGAATTCTATGCAGAATTTTTTTCGGGGAAGGCGggatgtcttttctttttttttctggatttGAGTGGATGCAGATCAGGTCTAATTTTACCGACAGCTTGATGCTCCTGAGTTTGGTCCGTGCCAAGGGGGGAGTTGTTCCCTGTTGCTCTTGTGCAATAAACCACTGGCTGTAGGGTACCAGTAGTACTAACCTGCTAAAGAGGCCTGCcactttttatataaataaagagcctcacaatactgtatgtatttatatattaattttaaattacattttttttaactaatcaGGTGTTTTCCCTCTGGCAACAAGCGCCAAAGATGCTGCTAAAATGAATCCGTCCCTGTTGGTTTGGGCACATTTGGTCTCATTTTTACAAGGtcgactgtatgtatgtgtgtgcaaagCTTACTATTAAATGgctatttatataaatatatattgatgCAATATTATTGAATTTGAAATGTGAGCAAAAGGAaaaagtgtgaatgtgtttacaAACTAGTCTCACCATGGTGTCACTAAACTGTGCATATTAACACTTTGAAATAGTTTAAGGCCCTATAAGGGATCTGTTCTTGTTGCACTTTGTATAAATCTCTGAACTTACTGATGTTCTCATCTTCTGTTTACTAATGTTTGCACTTCCTTTTATTTGTGGGAAGATTTCAGTTCTACACGGCATAATGTAGCACTGTTTCTTTGTAATATTTggcttgtgtttttaaatggccGTCACTATGGCACATTTCACTAAATCCTGAGCCTTTTGTTCCTGTGATGAGCTGAATGAgtgaaacattttaataaaacccactgaatcaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU315240 False 1289 lncRNA 0.41 3 3587576 3590879
TU315244 True 1938 TUCP 0.43 4 3553578 3590879
XR_005638443.1 False 1297 lncRNA 0.42 3 3587563 3590874

Neighbor

gene id symbol gene type direction distance location
LOC120554783 LOC106527415,LOC107377197,LOC103370263 coding upstream 1562 3548229 ~ 3552016 (+)
LOC120554431 osbpl11 coding upstream 14537 3520732 ~ 3539041 (+)
zswim2 NA coding upstream 657723 2890550 ~ 2895855 (+)
col5a2b col5a2 coding upstream 681465 2844611 ~ 2872113 (+)
trnar-ccu_19 NA coding upstream 743538 2809968 ~ 2810040 (+)
n6amt1 n6amt1,LOC102791235 coding downstream 12018 3602897 ~ 3604527 (+)
LOC120554447 LOC102195007 coding downstream 527039 4117918 ~ 4120596 (+)
LOC120554451 LOC103372195,LOC102795276 coding downstream 588957 4179836 ~ 4198507 (+)
nop58 nop58,LOC102781044 coding downstream 644610 4235489 ~ 4241283 (+)
LOC120554799 NA coding downstream 647648 4238527 ~ 4238610 (+)
LOC120554433 NA non-coding upstream 14537 3505847 ~ 3539041 (+)
G232211 NA non-coding upstream 190784 3332334 ~ 3362794 (+)
LOC120554428 NA non-coding upstream 198564 3315070 ~ 3355014 (+)
LOC120554423 NA non-coding upstream 286584 3266121 ~ 3266994 (+)
G232046 NA non-coding upstream 523320 2973977 ~ 3030258 (+)
LOC120554443 NA non-coding downstream 57380 3648259 ~ 3650261 (+)
G232298 NA non-coding downstream 62557 3653436 ~ 3744410 (+)
G232319 NA non-coding downstream 519244 4110123 ~ 4111860 (+)
LOC120554455 NA non-coding downstream 607958 4198837 ~ 4232080 (+)
trnam-cau_63 NA non-coding downstream 609683 4200562 ~ 4200634 (+)
G232031 NA other upstream 647092 2899813 ~ 2906486 (+)
sumo1 sumo1 other upstream 1059404 2489135 ~ 2494174 (+)
G231514 LOC101480717,LOC102290810,LOC102794459 other upstream 1454829 2096875 ~ 2098749 (+)
G231461 LOC107384560,LOC103366582 other upstream 1761720 1716411 ~ 1791858 (+)
LOC120554068 agap1,LOC101478076 other upstream 2032514 1468168 ~ 1521064 (+)
dock9b LOC103359855 other downstream 749615 4340494 ~ 4399319 (+)
G232425 NA other downstream 826285 4417164 ~ 4418102 (+)
scn1lab NA other downstream 1141583 4732462 ~ 4772995 (+)
LOC120554485 LOC103354594,LOC108245699,LOC106531295,LOC107086615 other downstream 1257759 4848638 ~ 4949089 (+)
LOC120554464 LOC103354592,LOC107380990,LOC103389749,LOC106930317,LOC103147190,LOC106960073,LOC105020031,LOC106574546,LOC108438056,LOC106575308 other downstream 1412442 5003321 ~ 5041882 (+)

Expression


Co-expression Network