XLOC_005040 (adprm)


Basic Information

Item Value
gene id XLOC_005040
gene name adprm
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 288108 ~ 290815 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009820
CTCTGACAGCGGAAACACCGGCTGGAGAGACCGAGAGAGCGGTGTTTTCACTACAGACTCCCGGTTATCTAGAGGCAGCCGTTACCGGCGATGGAGGATCCGGTGTTCACGTTCGGTCTGATCGCCGACGTTCAGTACGCGGACATCGAGGACGGCGAGAACTACCTGCGGACGCGGCGGCGCTACTACCGGGGCAGCGCGGATCTGCTGCGGGACGCGGTGCTGCAGTGGCGGCGGGAGCGCGTCCAGTGCGTCGTGCAGCTCGGAGACATTATTGACGGACACAACCGGCGGCGCGACGCTTCAGACCGCGCGCTGGACACGGTGATGGCGGAGCTGGACGCGTGCTCGGTGGACGTTCATCACGTGTGGGGGAATCACGAGTTCTACAACTTCAGCCGGCCATCGCTGCTCTCCTCACGGCTCAACAGCGCGCAGAGGACAGGGACCGACACCGGAAGCGACCTCATCGGTGACGACATCTACGCCTACGAGTTCAGCCCCGCCCCAAACTTTCGGTTCGTGCTGCTGGACGCGTATGACCTGAGCGTGATTGGCCGAGAAGAGGAgagtgagaaacacacacactcctggaGGATACTAACACAACACAACCACAACCTGCAGGACCTCAACCAGCcgccagTGAGTGTGGGTCTGGAGCAGAGGTTTGTGAAGTTTAACGGGGGCTTCAGTGAGCAGCAGCTGCAGTGGCTGGACGCAGTGTTGACGCTCTCTGACCACAAGCAGGAGCGCGTGCTCATCttcagcCATCTTCCGGTGCACCCGTGCGCCGCTGACCCCATCTGTCTGGCCTGGAATCACGAGGCTGTGCTGTCAGTTCTGCGGTCGCACCAGAGTGTGTTGTGCTTCATCGCTGGACACGATCACGATGGCGGACGCTGCACCGACTCCAGCGGCGCTCAGCACATCACACTGGAGGGAGTGATCGAGACTCCGCCCCATAGCCACGCCTTCGCCACCGCATACCTTTATGAGGACCGCATGGTAATGAAGGGCAGAGGACGAGTGGAAGACCTGACTATTACATATTCATGAGCGGACAATACAGTCATCGTATATTCATGAGCGGACAATACAGTTATCGTATATTCATGAGCGGACAATACAGTCAATGTCACATATTCATCAGCGTACATTTACATATTCATTAGCTCAGAACACAGTCATCATCACATATTCATGAGTGGACAGAATACAATCATCATGATAATAATCCTCATGAGCAGACAGTCAACGTCACATATTCATTGGTGGACATTTACATATTCATTAGCACAGAACACAGTCATCATCCCATATTCATGAGCGGAGAATGGAGAACACAGTACTCATCACACAGTCGTGAAGGGACATTGACATATTTAAGTGAAGAATACAACCATCATGATAATAATCCTCATGAGCAGACATTAATGTCATTTACATAAGAAGAGCAAACAGCTTATCATTTCCATGACTGGACAGTACAGTCTGTGTTGATTTGTGTATTTGATGATGCATATTCATGAGCCGAGGACACAGTCAACATCCCATATTCATGAGTGGAGAACACGGTAATTACCCAGCAATAAAGTCATTAACATATT
>TCONS_00009821
ttaatagtcAATTCAATCATTCATATGGATAATTCTCCTTAACTTCCGGTCAAGGTTATCTAGAGGCAGCCGTTACCGGCGATGGAGGATCCGGTGTTCACGTTCGGTCTGATCGCCGACGTTCAGTACGCGGACATCGAGGACGGCGAGAACTACCTGCGGACGCGGCGGCGCTACTACCGGGGCAGCGCGGATCTGCTGCGGGACGCGGTGCTGCAGTGGCGGCGGGAGCGCGTCCAGTGCGTCGTGCAGCTCGGAGACATTATTGACGGACACAACCGGCGGCGCGACGCTTCAGACCGCGCGCTGGACACGGTGATGGCGGAGCTGGACGCGTGCTCGGTGGACGTTCATCACGTGTGGGGGAATCACGAGTTCTACAACTTCAGCCGGCCATCGCTGCTCTCCTCACGGCTCAACAGCGCGCAGAGGACAGGGACCGACACCGGAAGCGACCTCATCGGTGACGACATCTACGCCTACGAGTTCAGCCCCGCCCCAAACTTTCGGTTCGTGCTGCTGGACGCGTATGACCTGAGCGTGATTGGCCGAGAAGAGGAgagtgagaaacacacacactcctggaGGATACTAACACAACACAACCACAACCTGCAGGACCTCAACCAGCcgccagTGAGTGTGGGTCTGGAGCAGAGGTTTGTGAAGTTTAACGGGGGCTTCAGTGAGCAGCAGCTGCAGTGGCTGGACGCAGTGTTGACGCTCTCTGACCACAAGCAGGAGCGCGTGCTCATCttcagcCATCTTCCGGTGCACCCGTGCGCCGCTGACCCCATCTGTCTGGCCTGGAATCACGAGGCTGTGCTGTCAGTTCTGCGGTCGCACCAGAGTGTGTTGTGCTTCATCGCTGGACACGATCACGATGGCGGACGCTGCACCGACTCCAGCGGCGCTCAGCACATCACACTGGAGGGAGTGATCGA
>TCONS_00009822
AGAGAGCGGTGTTTTCACTACAGACTCCCGGTAAGCTCCACACTCGGGCTCTGAGGGTTATTATTCTACAAGTCTAGAAGAGATGTAGCATGTCTGTAAACATAGCCTAGCATCATTTCTGTGGCAGTTATATTTAGAGTTGTGGTTGGTTGGAATGaacgttaaataaataactgtcgTTAACTTACGGTCAACGCTAACTAGCCGTTAACCGTCGCCGATCAGACTGAGGTTATCTAGAGGCAGCCGTTACCGGCGATGGAGGATCCGGTGTTCACGTTCGGTCTGATCGCCGACGTTCAGTACGCGGACATCGAGGACGGCGAGAACTACCTGCGGACGCGGCGGCGCTACTACCGGGGCAGCGCGGATCTGCTGCGGGACGCGGTGCTGCAGTGGCGGCGGGAGCGCGTCCAGTGCGTCGTGCAGCTCGGAGACATTATTGACGGACACAACCGGCGGCGCGACGCTTCAGACCGCGCGCTGGACACGGTGATGGCGGAGCTGGACGCGTGCTCGGTGGACGTTCATCACGTGTGGGGGAATCACGAGTTCTACAACTTCAGCCGGCCATCGCTGCTCTCCTCACGGCTCAACAGCGCGCAGAGGACAGGGACCGACACCGGAAGCGACCTCATCGGTGACGACATCTACGCCTACGAGTTCAGCCCCGCCCCAAACTTTCGGTTCGTGCTGCTGGACGCGTATGACCTGAGCGTGATTGGCCGAGAAGAGGAgagtgagaaacacacacactcctggaGGATACTAACACAACACAACCACAACCTGCAGGACCTCAACC

Function

symbol description
adprm Enables 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity; manganese ion binding activity; and pyrophosphatase activity. Orthologous to human ADPRM (ADP-ribose/CDP-alcohol diphosphatase, manganese dependent).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0047631 ADP-ribose diphosphatase activity molecular_function
GO:0030145 manganese ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0047734 CDP-glycerol diphosphatase activity molecular_function
GO:0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism
ko00230 Purine metabolism

ZFIN:

id description
ZDB-GENE-040426-1406 Enables 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity; manganese ion binding activity; and pyrophosphatase activity. Orthologous to human ADPRM (ADP-ribose/CDP-alcohol diphosphatase, manganese dependent).

Ensembl:

ensembl_id ENSDARG00000026090

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009820 False 1610 mRNA 0.53 4 288108 290815
TCONS_00009821 False 944 mRNA 0.60 3 288765 290413
TCONS_00009822 True 805 mRNA 0.57 2 289786 290782

Neighbor

gene id symbol gene type direction distance location
XLOC_005039 map2k4b coding downstream 475 281166 ~ 287633 (-)
XLOC_005037 NA coding downstream 8773 250081 ~ 279335 (-)
XLOC_005038 NA coding downstream 22907 262396 ~ 265201 (-)
XLOC_005036 CABZ01102039.1 coding downstream 75265 204095 ~ 212843 (-)
XLOC_005035 NA coding downstream 107299 180200 ~ 180809 (-)
XLOC_005041 pts coding upstream 21633 312448 ~ 314899 (-)
XLOC_005042 NA coding upstream 46993 337808 ~ 355555 (-)
XLOC_005043 NA coding upstream 115372 406187 ~ 408631 (-)
XLOC_005044 hs3st3l coding upstream 124896 415711 ~ 431249 (-)
XLOC_005045 dhrs7cb coding upstream 164737 455552 ~ 464007 (-)
XLOC_005034 NA non-coding downstream 112589 171286 ~ 175519 (-)
XLOC_005031 NA non-coding downstream 222348 64267 ~ 65760 (-)
XLOC_005057 NA non-coding upstream 781670 1072485 ~ 1085227 (-)
XLOC_005062 NA non-coding upstream 1162085 1452900 ~ 1453339 (-)
XLOC_005063 CU694266.1 non-coding upstream 1199657 1490472 ~ 1490588 (-)

Expression


Co-expression Network