LOC120554502


Basic Information

Item Value
gene id LOC120554502
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 5060799 ~ 5086125 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU315783
AGTTGTCCCCAGTGTGTTCCCACCTTTCAACATCACCTGACCGCCACACACACCTGCTCCACATGCCCTCATCAGCTCCTCTGCGTACCTGTCCGTCAGTTGTTTGCTGCAATCTTAGCTGTTCCTGCTACTTTTGATGACGACTCCTTACCTTTGCCACTTTGGACTGCCCGCCTGTTGTCAAAACTCTGTTTTCATGAACTGACAACTCTGGCCGATTGCCTCGGCTGCATGTGGCGCGAGTGACTGAAGATGTTGGAACTCTCCACTACAGGGATCCACCAGCAGGCCCACAGACCTGCAGTGCAGCGACGGCACCACGCCAACCTGTGCCCGGCTCCCACCACAGCTCCATCCAAAACGTTTAATCAAAAGGGACATTCTCTCCACTTGGTCCCGCAAGGAAATAGAAGTTGTTGAGCTGTTGGCCCATGCTGTGCACCTTGGCAGCTCGACAAAGAATAACCCAGAATGGTCTACTCTCCGCTACAGCGCCAGGGCATTGGAGAGGAGGCCAGTGATACAATCTGAATTTTCCAACAGGCAATTGAAGCTTTGGGGACATGGTTGATGGTGATGTGTCCAACGGTGGCCTGATCAGCCTTTCTGTCTGTTTATCATCTCCTCGAAACAGGGCCTGCATGTCACTTCCAGCAGATGTTGATTCAAGTCCCTGAATGAATGTCAGGGGGGAAAATTATTGTAATTTCACTCGTCAAGCATGATTGTAGCATGTACCCCAATATTAAGGTCACCTTTTTCTGGCTGCACTGATTCATTTAGACACTGCTGTGCAATTTCACTGTCAAACACAGACCACATGTCttacatgtatgtttttttattttacttttgagGTTGCGTCTTTCCTTGTGTCAAATTACAGAAAGCTATTTTACACCTTTGCTTCAAATTGTGATGCAATGATAGTAAAACCTCAGGTTGAGTGTTTGACTCCCATTGCACCAGTCTATACAACCTGCGCTGATAAGACTATTGTACATTTAGGTTCTTTAGATAAGAGTCCACCTGATAACTAATATTATTAGTAGTTGCAGTCAGGGGCGTGGTAGTGTTGAGAGGGAAAGTGGAACTTAGTACCCAGTGCCCCAACATAGGGAGCACCATCAAAAAAGCTGAACATTTTTAATATTCTGCTTCTATGTTGCAGCAGACTGGGCTAGCATCTGGTCCGATGTGGTTTGTCAAGTCTGACTATCATGGTTTTTTTATCTACATCATTGTTTGAATGCAGAAAATCACCTTTTTTTTAGaataataaatagaataaaGGTTTCACAGAGATAAGTCAAAATGTCATCTGGACAGTAAATAATGACTGGCACACGGAAAAGGAAGTCTTTGCCCTTATATTCGTTGTCTGTTGTCTAGCTGTCTACCTGGAACCCCCAAAATATTGGCGTTGCCCCCAGAGGCTAAATCGTCGTCAGAGACGTTGGGTTCCGAGATTGACTTTTCCTAACCTTTACCCATAACCTCCAAATCAGGGGGCCAACTTAAGCGTCCTAATGTTCTAATAATCCTTCAAACGCATCAAACACATAAACGGTACCTCTGAAACCCTTTATTTCCAATAGCTTGCCCTGCGCTACAACGGTTTTCCGCTGCGAGTGCAGCTCAAACCACATTGTCTTAAAGGCCCATACACCCTCACAGAGAAAAGAGGCATAAAATATGCTGAGATTTCAGATTGTTAAGACTTTCTTAAATGCAATataaacactttatttaatttcttaatAACTATAACAGATGCATGTGTTAACATACTGATTCAGTTATATTTAGAGGCGTAACAATGGCTGCATTAAAAGGGGAAGGGGGCCCACTGAGGCTTCTTATGCACAATACAGGGTCCTGAGTTCTGTGCTAGTGGTTTGTTAGGGGCCGGTGATGCCTAAAATGAAGTTTGTGGGtcctttttggcttttttttaagACTTCTTCAAACTCAAAAAAGTGTCTTAACTGCTGGCCCTGACACAAAGTAAGatgcacaaaataaaaaaataagaatgttatgctcttttctttttaatgaaaGAGATTCACTGAAAAATAGTCATTACTCACATTCACCATTGAAATGTTACACGGCTGATTCAGGAGAAGGCCATAATGCTGAAAGTCCCAAGGACGAAATAAATGTACTGCATTAGATTTAATGTGGCGAAtaataagggaacaaattcAGATTTATAAAGGAATAGCAAGTTGTTAGGGGCAAGAACCATCTAAAACTGCTGGTAAATATCTTTTAACATTCTTTCATTCTGAGAATTGgattaaaatgtgattaaagGTGTATGGAAACTCGAGTTGTGATCAAGGCAAagacaattaaataaatatatggaATATTTGACAGTCAGCCAAGCTGTCTTGGTTTTTATCTTTCTAGATTTGTgaacatgtgcagtacctaCACAACAACTCTTATATCTGCCAAAGCAGTCGTGTAATACTATCAAGAAGTTTAATTAGGTCAATGTGTTCTGAGGATGTCTGTAAatgctgtttttctctttgaACTTAATTGTGTGAAACACGTATCTTAAAAATCCAAATCTATGACTGCAGCACGATGCCTTCTGTTGGGAAAAAAGGTCCGGTTTGGTTACACAGTGACTTTTTAGAGCCACTGTTTCTTATTCTAAACTTCACCACCTGAATTTCATACAGTCACTGTGAGAAAAGCATGTATACACGTACATCTTTTTATGCTGTGAATCCTCAAAAGATGTAATTTCATTAGTGTGGAAGACTGTAATAGGATATATAGTTATTAATGTAATATTTACTGTGTATTCATTTCATGAAAAGCACCTGAAAATCAGTTGTAATGACAATTACAAAGAATagatcatttcatttattaGAATCCTCGTTTATCAAAACCTccatacacacagcacacaaagaTGAGAATCATACTCCAACTTGAAGCGGCACTCTGGTAAATTTAGTGTTGCacttttatttagtttgagGACTcacaaaaaaaccaaaacaaaaaaacggtcAAAATCAAAGCAACAGATGCATAGATATCCTGACTGGTAGTCCCCAGTATTGGTCCAAAACCGTGGATCcttatttcccataatgcaactcaatagTGCAACAGTTTCTTAGACTTTGTTTCCCAGATGGAAAATCTAACATAGATATGTTTCTTCCGATACAAAATATCC
>TU315784
AGTTGTCCCCAGTGTGTTCCCACCTTTCAACATCACCTGACCGCCACACACACCTGCTCCACATGCCCTCATCAGCTCCTCTGCGTACCTGTCCGTCAGTTGTTTGCTGCAATCTTAGCTGTTCCTGCTACTTTTGATGACGACTCCTTACCTTTGCCACTTTGGACTGCCCGCCTGTTGTCAAAACTCTGTTTTCAGCGCCACTTCCAAGAAAACTGTTCCAGCGAAGTGTCTTGGCAGTGATGAAGCATAAAAGAGCTGAGGCCTACAGGAACAACGAGTCCACATATCGTCGACAAATGGAAAAACGAGTCTCTGGGAAGTTCTCCGGATCTATTGCTAGGACGTCTTGTGATGAATAGCTAACCTTGTTTCCCAAAACTCTGCTCCCGTACAGCGGCTTCATCACTATGCAGCTCTATCTTCATACATCTAACTCCCTTCCTGATTTATTGGAGGCTATGGCAGAGTCACTAGACCTTGCATCAAACGCTATGGCATTTTGTGCACAAGTACAAATGCTTACATAGACTGTGTGAAGACAGATACATTTGTAAGATGGATGAATGGTGCACATTTGAATTGCAAAACATTCAGACACTCATTACATGGATTTGTTGGAAAATGCAATGTCTCTGTAAAGAAAAATCTCTGCATCCAGTGCCAACATACATAGAGGTTTTGCTTTAATTgaacacatt
>XR_005638483.1
CTGTCCGTCAGTTGTTTGCTGCAATCTTAGCTGTTCCTGCTACTTTTGATGACGACTCCTTACCTTTGCCACTTTGGACTGCCCGCCTGTTGTCAAAACTCTGTTTTCATGAACTGACAACTCTGGCCGATTGCCTCGGCTGCATGTGGCGCGAGTGACTGAAGATGTTGGAACTCTCCACTACAGGGATCCACCAGCAGGCCCACAGACCTGCAGTGCAGCGACGGCACCACGCCAACCTGTGCCCGGCTCCCACCACAGCTCCATCCAAAACGTTTAATCAAAAGGGACATTCTCTCCACTTGGTCCCGCAAGGAAATAGAAGTTGTTGAGCTGTTGGCCCATGCTGTGCACCTTGGCAGCTCGACAAAGAATAACCCAGAATGGTCTACTCTCCGCTACAGCGCCAGGGCATTGGAGAGGAGGCCAGTGATACAATCTGAATTTTCCAACAGGCAATTGAAGCTTTGGGGACATGGTTGATGGTGATGTGTCCAACGGTGGCCTGATCAGCCTTTCTGTCTGTTTATCATCTCCTCGAAACAGGGCCTGCATGTCACTTCCAGCAGATGTTGATTCAAGTCCCTGAATGAATGTCAGGGGGGAAAATTATTGTAATTTCACTCGTCAAGCATGATTGTAGCATGTACCCCAATATTAAGGTCACCTTTTTCTGGCTGCACTGATTCATTTAGACACTGCTGTGCAATTTCACTGTCAAACACAGACCACATGTCttacatgtatgtttttttattttacttttgagGTTGCGTCTTTCCTTGTGTCAAATTACAGAAAGCTATTTTACACCTTTGCTTCAAATTGTGATGCAATGATAGTAAAACCTCAGGTTGAGTGTTTGACTCCCATTGCACCAGTCTATACAACCTGCGCTGATAAGACTATTGTACATTTAGGTTCTTTAGATAAGAGTCCACCTGATAACTAATATTATTAGTAGTTGCAGTCAGGGGCGTGGTAGTGTTGAGAGGGAAAGTGGAACTTAGTACCCAGTGCCCCAACATAGGGAGCACCATCAAAAAAGCTGAACATTTTTAATATTCTGCTTCTATGTTGCAGCAGACTGGGCTAGCATCTGGTCCGATGTGGTTTGTCAAGTCTGACTATCATGGTTTTTTTATCTACATCATTGTTTGAATGCAGAAAATCACCTTTTTTTTAGaataataaatagaataaaGGTTTCACAGAGATAAGTCAAAATGTCATCTGGACAGTAAATAATGACTGGCACACGGAAAAGGAAGTCTTT

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU315783 True 3214 lncRNA 0.40 2 5060799 5084339
TU315784 False 701 lncRNA 0.45 2 5060799 5086125
XR_005638483.1 False 1276 lncRNA 0.44 2 5060887 5082489

Neighbor

gene id symbol gene type direction distance location
LOC120554486 NA coding upstream 5817 5051007 ~ 5054982 (+)
LOC120554477 LOC103354588,LOC106960074,LOC106930318,LOC103147191,LOC103474384 coding upstream 9937 5044021 ~ 5050862 (+)
LOC120554483 LOC104926398,LOC103354589,LOC104942249 coding upstream 62378 4995743 ~ 4998421 (+)
xirp2a xirp2,LOC103474301 coding upstream 216000 4796307 ~ 4844799 (+)
gca LOC104926393,LOC101070744,LOC103474249,LOC103354601 coding upstream 559700 4491643 ~ 4501099 (+)
dzip1 LOC102776338 coding downstream 8126 5094251 ~ 5108905 (+)
LOC120554463 abcc4,LOC102196569,LOC100702162,LOC102309803 coding downstream 48731 5134856 ~ 5166194 (+)
acp2 acp2 coding downstream 207042 5293167 ~ 5306737 (+)
txndc16 txndc16 coding downstream 233993 5320118 ~ 5335281 (+)
nid2a LOC103358232 coding downstream 297038 5383163 ~ 5428369 (+)
G232595 atp5b,LOC103392222 non-coding upstream 58132 5000445 ~ 5002667 (+)
LOC120554506 NA non-coding upstream 546840 4512612 ~ 4513959 (+)
G232453 NA non-coding upstream 548702 4511870 ~ 4512097 (+)
G232449 NA non-coding upstream 552866 4507482 ~ 4507933 (+)
LOC120554498 NA non-coding upstream 553338 4504352 ~ 4507461 (+)
G232670 NA non-coding downstream 29917 5116042 ~ 5116391 (+)
G232680 NA non-coding downstream 64858 5150983 ~ 5191290 (+)
LOC120554496 NA non-coding downstream 86264 5172389 ~ 5180268 (+)
G232683 NA non-coding downstream 86268 5172393 ~ 5630828 (+)
G232691 NA non-coding downstream 91444 5177569 ~ 5178416 (+)
LOC120554464 LOC103354592,LOC107380990,LOC103389749,LOC106930317,LOC103147190,LOC106960073,LOC105020031,LOC106574546,LOC108438056,LOC106575308 other upstream 18917 5003321 ~ 5041882 (+)
LOC120554485 LOC103354594,LOC108245699,LOC106531295,LOC107086615 other upstream 111710 4848638 ~ 4949089 (+)
scn1lab NA other upstream 287804 4732462 ~ 4772995 (+)
G232425 NA other upstream 642697 4417164 ~ 4418102 (+)
dock9b LOC103359855 other upstream 661480 4340494 ~ 4399319 (+)
LOC120554524 nhlh2,LOC104936900,LOC103370041,LOC108245682,LOC101487065,LOC107087002 other downstream 402036 5488161 ~ 5498524 (+)
LOC120554525 vangl1,LOC102194868,LOC101486397,LOC102297404 other downstream 422963 5509088 ~ 5568201 (+)
fdx1 fdx1 other downstream 718910 5805035 ~ 5813194 (+)
LOC120554182 steap3,LOC103360323 other downstream 1355570 6441695 ~ 6453327 (+)
LOC120554601 mest other downstream 3535980 8622105 ~ 8628297 (+)

Expression


Co-expression Network