Gene
RNA
| Item | Value |
|---|---|
| gene id | G233703 |
| gene name | atg13 |
| gene type | unknown |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053135.1 |
| NCBI id | CM020932.1 |
| chromosome length | 21835524 |
| location | 10271069 ~ 10272859 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| atg13 | Predicted to be involved in mitophagy; piecemeal microautophagy of the nucleus; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagosome assembly. Predicted to be located in cytoplasm. Predicted to be part of Atg1/ULK1 kinase complex. Predicted to be active in cytosol and phagophore assembly site. Predicted to be extrinsic component of membrane. Orthologous to human ATG13 (autophagy related 13). |
| description |
|---|
| PREDICTED: autophagy-related protein 13 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU317341 | True | 986 | TUCP | 0.51 | 4 | 10271069 | 10272859 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| harbi1 | harbi1 | coding | downstream | 5947 | 10261823 ~ 10265122 (-) |
| unc50 | unc50 | coding | downstream | 55597 | 10208422 ~ 10215472 (-) |
| sox1b | sox1,LOC104929113,LOC102792425 | coding | downstream | 308549 | 9960572 ~ 9962520 (-) |
| tubgcp3 | tubgcp3 | coding | downstream | 417509 | 9840242 ~ 9853560 (-) |
| rcbtb1 | LOC104942332,LOC103356759 | coding | downstream | 532840 | 9732514 ~ 9738229 (-) |
| kpnb3 | ipo5 | coding | upstream | 2172 | 10275031 ~ 10287161 (-) |
| gpr180 | gpr180,LOC102794014 | coding | upstream | 117092 | 10389951 ~ 10398975 (-) |
| ddx3xb | LOC101487926 | coding | upstream | 139576 | 10412435 ~ 10428605 (-) |
| slc5a3a | slc5a3,LOC104962291 | coding | upstream | 162455 | 10435314 ~ 10443050 (-) |
| LOC120554088 | ptgfrn | coding | upstream | 258968 | 10531827 ~ 10542635 (-) |
| G233685 | LOC103356767 | non-coding | downstream | 48894 | 10220878 ~ 10222175 (-) |
| G233675 | LOC104966322 | non-coding | downstream | 63594 | 10206152 ~ 10207475 (-) |
| LOC120554344 | NA | non-coding | downstream | 74693 | 10191223 ~ 10196376 (-) |
| LOC120554591 | NA | non-coding | downstream | 120653 | 10129535 ~ 10150416 (-) |
| G233662 | NA | non-coding | downstream | 143504 | 10126900 ~ 10127565 (-) |
| LOC120554081 | NA | non-coding | upstream | 100129 | 10372988 ~ 10374931 (-) |
| G233855 | NA | non-coding | upstream | 452270 | 10725129 ~ 10725359 (-) |
| G233857 | NA | non-coding | upstream | 464776 | 10737635 ~ 10738167 (-) |
| G233858 | NA | non-coding | upstream | 465478 | 10738337 ~ 10738549 (-) |
| G233859 | NA | non-coding | upstream | 470215 | 10743074 ~ 10743463 (-) |
| arhgef7b | arhgef7,LOC102205121,LOC101465658,LOC100696931 | other | downstream | 94259 | 10152861 ~ 10176810 (-) |
| G233644 | NA | other | downstream | 228663 | 9965692 ~ 10042406 (-) |
| G233510 | LOC103372156,LOC102206165,LOC102306683 | other | downstream | 643128 | 9525789 ~ 9627941 (-) |
| G233521 | zc3h13,rpl31,LOC106575915,LOC102795706 | other | downstream | 712229 | 9553485 ~ 9558840 (-) |
| G233436 | NA | other | downstream | 929658 | 9339944 ~ 9341411 (-) |
| LOC120554082 | NA | other | upstream | 110829 | 10383688 ~ 10387933 (-) |
| si:ch211-132g1.7 | ptgfrn,LOC104953994 | other | upstream | 191463 | 10464322 ~ 10525085 (-) |
| G233954 | NA | other | upstream | 675609 | 10948468 ~ 10969110 (-) |
| LOC120554127 | NA | other | upstream | 764496 | 11037355 ~ 11046959 (-) |
| LOC120554131 | NA | other | upstream | 863768 | 11136627 ~ 11139245 (-) |
