si:ch211-132g1.7 (ptgfrn,LOC104953994)


Basic Information

Item Value
gene id si:ch211-132g1.7
gene name ptgfrn,LOC104953994
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 10464322 ~ 10525085 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU317516
TTGTATCATGTTGACTTGCTGTGTGAACGCACACTCACAGTTCCAGCAACACAAAGTGAGGATGTTTGGGTCCAAACCCAGCAGGATCCCAACAGACCGGTTAGGTTTGTAATAAAATGTGCCAGGCTGTGTTTCCTCCTCCACTGACTTGGCTTGGATAGGGCtttgtttgatgtttttaaatagtttttaaaaaggtatcAGGCTGTATTAGGGACATATTTTTCACCCTCAGAGCTAAAACGCTCAAAGTTAAGATTTAAAATAGGGGTGTTTCCTGTGGGATGTTGCATATTCACACAATGCATCGGTCGCCCACTCAGCTCTGACTTTGTGCACAAAACTGCTTCAAATTCGGCCTGGCCAGGCAGCCAGTGCAGAACTTGAACTGTTGTCCAATCAGAACACAATGCCCGAATCCATAAAGATTTCAGATTGATGATACTCAGACATACTCTGACAACAGTTTATTTCATAATTGCACAAATTCACAACACCATCAGCCACAGGAAACACCAAGATAAACCTGTACTGTACCTGTAATTAAAGCAACAGTGATATGTTCCTTCAGTTAGGGAAATATTGACGAAATGTGTCTGTTTTGCCTTGATTGATGGTGACGGTTACTTCAGAAACTTCCGGTACGTCTCCATAAACCCACTCcacaggtctgtgtgtgtgcgcctctcTGTGTCAGAGCTGTTGCAGTATTCAAAATGGGTTTACCACTATCATTAACACCCATACGTTCACACAGGTGAATAATAGGGCTCCGTGCCAAAtgccacaatacacacacacacacgcacacacacagcacgtaGCATTGATACACACCACTGATCATGTCACTGCAAGAATTCCCCAGTGTCCTTTTACTTTGTCATTTTACCGCAATGAGTATGatgaaatgtgttgttttttaaataaatagattTGTAA
>XM_039792688.1
tctatcAATCTCGCCTTCATTCCCGTGCACACGTTAAACCGGTTTAGTGTCCTTGTGTGAACCATGAAAACACTCCCGTCAGGACTCCGTTTTTTACCCGACTAGGAATCAAACGTGTGCGTCCGCTTAGCTTTGCGGCTTCGCCTGGTGTGCGGTGCGCTGCGGACTGACTGCTCACATCTCAAGAGTTGGATTGGATTGACCGACAGCGGCGGGAGAGGACTGGTgttaccccacacacacaggacaaagaagactggggggggggaattaaAGGAAAAAGATAAGAGTGGAAGAACAGAGGAATGAAAATGGATAGCTGTCTCTTCACACTCGTCTTTGGTCTTTCAATGCTCGGTGGGTGCTTGGCCCGGGTGGTGACGGTGTCTCCTGGTCCATTAATCCGGGTGGAGGGTCAAACGGTGTCCATCAGATGTGATGTTACCGAATATAGCGGACCTAGTGAGCAGGATTTCGAGTGGATGATGTCCAAGGAGGCGAACGGGAAGAAGATGAACATAATTTCCTCCTTTGATACCAGGTACTCGGACCCGTCGCTCAGCAAGCGCGTTGCGTCTGGCGACATCTCGGTGGCGCGTCTCAAGGACAACGAGGTGGAGCTGAAGATAGCCGAGGTGAAGTCAACGGACGCCGGTTACTACTGGTGTCAAACGCCGAGCACCGACTCAGTCATCAGTGGCAACTACGAGGCTAAGGTCCAACTCACTGTCATCCTCAACACCCTCAAGGTCTCCCCCCTGACCCCGCCCCCCGTCGTCCCAGAAGGAAGTGACCTCACGCTCTCCTGCAACGTCACCCGGGAGCTCAGCCACCCCACCTACCTCTCCGTCACCTGGTCGGTGAAGAGGGGAGCGACATCGGAGGAAATTTTGACATTTGGCCCTCAGGGAGACGTGGTCACAGGGGCCAAGTACACCCGGCGCTACGCCGACGGAGGCATCCGATTGGTTCCCGGGAAGAACGGATTTTTCGAACTGGTGATTTCCAAAGTGACGACGTCTGACGAAGGGACTTATGAATGCAACGGAACTGAATGGACGTATGAAAATGGAGGGAAGTGGATAAAAATCGTGGAGAGCACTAAAGAGATGGGAACTGTGTCTGTAACTCCTACAGGCCAGTCCCTCAGTGTGAAGGCTTggtcctcctctccctcctccacgCCTCTGCTGCTCTCCCCCGGCGAGAAGCTGACCCTCGTCTGCTCCGTCTCCGCCGACAACCTGCCCGCCCTCGCCCTGGAAGTCACCTGGCTGGCCGACGGCCGCGAAATCGTCACCATGGAGCTGAGCGGGGTGGTGATCTCAAACACGTCCTCGGGCGGCGCGCAAGGAAAGCGCGGGGAGGCGACCCTGGAGCGGACGGGAGTCGGAGAATACAGGCTGGGGGTGAGGGGGGTGAGCGGGGACGACGGAGGGGTGTACACCTGCCGCATCCGAGCCTTCATcgagaaaggagggaggagctcgggaggaggagggaggtggcACATGGCCGCCGAGAAAACCTCCAGCCCTGTAACCGTAAAGGTGGCGCAGATCAAACCGAGCTTCACGGTGACCCTTGAAGCCGTCCTGAACCCCAAGATGACGGCTGAACCCACAGAGCTGGCATGTCGTGTCACCAACATTACCCATTTACCCCCAGGAGGCCGACTGGGTGTCACCTGGGAGCACACCACACTTCCTGGTACAGGGGGTGGTCCTCAGACCTCACATCCCATTGGCTCCCTGGACGGCTATGGCAACCTGTTGCCGGGATCGACGTATTCTGACAGGCTGAAGAGCGGCGTGATCTCTCTGACTAGAGTCCAGCCCGACACATTTAAACTGCGATTCCTCCGCACTCAGGAGATCGACATGGGCCAGTATGTCTGCACGGTGTCTGCTTGGAGTGTTAACAGCCAGGGTGACATCATGAATACCAGCGAGTACCAGAGCTCGCAGCTGGCTGTACGATGGGATACCAAACGTCCCACTCTGAACGTCGTGGCCAAACGCATCCGTGAAGCCTCAGTGGGCGGTGCTACCTTTGAGATGAGCTGCGCCGTGGCCTCTGAGAACCTCGGTGAGGCGGGTTACTCAGTGCTCATCAAATGGCAGGACAGCCTGCAGGGCACCGTGAGAACCATCATGACTCTCAGCCCTGACAACGTCCTGCAGCACGGAGAAGCCACAGACCCCAGCAGGAGAGACAGTCTGGTTCTGACAAAGTCCGGTCCGGCAGAGTTTCAGTTTCGGCTAGCGGGCGTCCAGTTGTCCGACAGAGGTTTCTACTGGTGCGACATCACCGCGTGGACCAAACAGCAGCCGGGACAGGCTTGGACAAAAGCCACCAGTGCAGAGTCTAACAAAGTCAGGATCGACTTTCAAGAAAATGGGCCGTCCTACTCCGTCGCCATCCATTCAGACACCAACATTGTTAATCCATGGGAAACGGCCAAGATGGAGTGTTCGCTCACAGTCCAAGGATCTTCCCCAAAGACTGGCACTCAGACAGatGACCTGGCGTACGAGGTGCGTTGGTTTTTCACCAGGCTGCGCGGTGGAGAGACGACGACCCTGGTGGCCAGCGTGGACCGCTTCGGCGTTGTGACGAAAGACACTCGCAACTCCTCCAGTGACATTTCAATAGAGCGCAAGGACACGCACACCTACATGTTGAACATTCATGGCACTCAGGACAGTGACAGTGGCGAGTATCACTGCGTCGCCACTCCCTGGTACCTGTCGGCCTCAACCGGAGCCTGGACTCAAGCCAAAGAGCTGCCGTCATCTCGAGTCTTCCTTACAGTCCGATTTGCTGTGTGGGACTCCCTCAAGTTACCTCTCTTATACGGAGTAGCGGCCTCGATAGgtgtGGGCCTCTTCTCTCTGGTCCTAGGTCTGGTTTGCGCCCAGTGCTGCTGCcgcaacaccacacacactccgcGCTCGCGCAACAAACTCATGGACCTGGAGATGGACTGACAAACACTTTCCCCCGCACCCACACACTGCAGCGCTCACAggaaaccccacacacacaacagacacacgcCCATAGACGATTTCTGGGACACCCAGTTGTTTCCATGCGAAGGACGTTGGGAGTAAAATGACACCTCGCTTTTGGAAACGCAAGCCTGACTCGTCGATCGCAATGCTTTTAGGGGAGGGGTGCTCGGGGGGTTTCTTCAGCTCTGCAGTGGAGGAGCAGGGGAAAGCGCCAATGAGACTTCATTTTCTACGGAGATCCATTAATATCTGCGGAGCTtccagtgatttttttttttttttttttacaccgaTATCTTCGCTCCCCGTTAAGACCATAGCACTACAAGAAACTCGAGAGTAAAATTTTTGCCGAACAGGATGCTTCTGAGACATCACTGCCACTTGGGAATAAAGGACCACTAAACAGATCTGCTGCCTCTGGAACCACTAAGGATGACAAATGAGGCTCTCCGGCTGGactacttttttattattttttttttttcttctgatgCCAAGGCTCCCTGCAAAGGCCAACCAGTCCGTTTTCCTGATAGTAACCGAGTCTCTCAGAGCAACGGCACACCAGCGTACCCTGttggattttccttttttgaGGAAGCGCGGGAAATTCAAGGGGTGGTTGGCGCTTTGCGAGACGGAAGCAGCATTTCAGTTGCGCGTCTGCGGCCTCGACCTATCCCTGTTAAGTCCCTAAAGTTGTTTTGTATGTGCAGAGACTGTCGGTTTGGGCGGCCTGAGACAAAGTCCCGTTCATACGGGCAGCAGAGgtcctaaaaaaacaaacaaaaaaagtggtGCTCCGCGTGCTTTCCACACCAGAGGTATTGCACTACAACTACCATCCCAGAGTATTCCTACCTTAACAAAAGGACTATTTACTTTTATTCTCAACTCTAGTTTTTTGAAAAATTTAAGAAATTTTAAAATGAGAGACATTTTTAAGCTTTACAATGAGATATGCAGttagggtgtttgtgtgtgagatatACTGTACGTGGTGCCAATATGTGAACTAACAGAGGCGTGCTCGGTTCATATCGCCAGATCAACACTTGAACTGCCACTAAAAGTGGCGACAGCAAGCACTCTTTCTTTTCTAGATATTCAGAAATGTATCCTGCTGTTGTTTTGCCAgagtctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgatgcgAGTGCTTTGCTACAGTATGTGAGACCGAGTTGCATGTGCTGTTTTCTAAGGACAGACTGGTGTCATTCAGGAGCAACACAAGCCTTTTCCTGGGTTACATTTTTCGTGACATCAGAGTCTCATACATCCAGATATTTAAACCTAGCGGTCACTAATCTAGACTCGCATGTGTTCCCACGGTGAGCAACATGACTCTGTGTGGGCTCTGGTGCGAGAAACTCTGCCACTTCCATATTTTTGAACCAATCGTGCATGATTCTCTGTTTTAGTTTTGCTTTTTAAAGGAGTAGtgcaacattttggaaaatggcGTGTATTCGCTTTCTTTCCGAGATGGAAAAGGTCTTTATCAATCTCATGTCAGTGCATTTCAGTACGGAGCTAGAGTCAGGgtgtggttagcctagcttagcataaagactggaagcaaggGAGACCGCTAgactggctctgtccaaagtgaataaaaaaaaaacaccagcaccgctaaagctcactaattaacacattgtagtttgttttttttttgtttttttcttcttcattccATAGAATTTTGGTTTGGTGGGAGATTAAATGCTGTAACTATTTCTTGCCTGGGCAGACGGATAAACTGCTAGTTAAGAAAAAGTTCTAGCGTATACAACAACACTGCAGTTTGCATACAGATTAAACCAATAAGATAAAATGtgttagaggtgctggtagtcatttttttattttttttattctgtcgGTCTGTTatgcagtctttatgctaagctaagctaaccatgtTCTAAGTCTCCTTATCTAACTATCTCTCAAAAAGGAAGCAAATAAAgcgtatttcctaaaatgttgaactattttaaacacCACATGATTTCAATGAGTTTAAGGGGCAGTTGACATTTTTGGTAGATCCAATTATCACTTTTGGTTTAGCCTGGTGAGCAGTTCCCCTGTTTCCCGtttaaagcaacaacaaaaaaaaacgcccCAGAGCTATCGCTGGCAAACAAGCTCTACTCAAAAAGTGTCAGACTGTTCCTTAACTCTCGCTAACTAGCCAGAAAACTTTCAGTAAATTGGTTTCAGAGACGTGAACTGCAGCACTAGATATGGCCCTTTTCCAAATGAGATGTTTTCATCTCAACTCTTTCAGTGAAAAGTTTTACCATGCACTTAACAGCCAAAactgaaaactaaaaaaaaaaaatatatatatacacatatatctGTAGAACAAAAGCATTACCAGCTGATTATGAAAGAAAGCTGTTCCCAACTGACATGTGTTGAGTctctttggtgtttttttttacagcaaacCAATGAATTGTTGTATCATGTTGACTTGCTGTGTGAACGCACACTCACAGTTCCAGCAACACAAAGTGAGGATGTTTGGGTCCAAACCCAGCAGGATCCCAACAGACCGGTTAGGTTTGTAATAAAATGTGCCAGGCTGTGTTTCCTCCTCCACTGACTTGGCTTGGATAGGGCtttgtttgatgtttttaaatagtttttaaaaaggtatcAGGCTGTATTAGGGACATATTTTTCACCCTCAGAGCTAAAACGCTCAAAGTTAAGATTTAAAATAGGGGTGTTTCCTGTGGGATGTTGCATATTCACACAATGCATCGGTCGCCCACTCAGCTCTGACTTTGTGCACAAAACTGCTTCAAATTCGGCCTGGCCAGGCAGCCAGTGCAGAACTTGAACTGTTGTCCAATCAGAACACAATGCCCGAATCCATAAAGATTTCAGATTGATGATACTCAGACATACTCTGACAACAGTTTATTTCATAATTGCACAAATTCACAACACCATCAGCCACAGGAAACACCAAGATAAACCTGTACTGTACCTGTAATTAAAGCAACAGTGATATGTTCCTTCAGTTAGGGACACTAAGGGGGTTAAGCTGAAAACCCACTTTGAGAAATATTGACGAAATGTGTCTGTTTTGCCTTGATTGATGGTGACGGTTACTTCAGAAACTTCCGGTACGTCTCCATAAACCCACTCcacaggtctgtgtgtgtgcgcctctcTGTGTCAGAGCTGTTGCAGTATTCAAAATGGGTTTACCACTATCATTAACACCCATACGTTCACACAGGTGAATAATAGGGCTCCGTGCCAAAtgccacaatacacacacacacacgcacacacacagcacgtaGCATTGATACACACCACTGATCATGTCACTGCAAGAATTCCCCAGTGTCCTTTTACTTTGTCATTTTACCGCAATGAGTATGatgaaatgtgttgttttttaaataaatagattTGTAAGATGTA

Function

symbol description
ptgfrn Orthologous to human PTGFRN (prostaglandin F2 receptor inhibitor).

NR:

description
PREDICTED: prostaglandin F2 receptor negative regulator

GO: NA

KEGG:

id description
K06729 PTGFRN, CD315; prostaglandin F2 receptor negative regulator

RNA

RNA id representative length rna type GC content exon number start site end site
TU317516 False 942 lncRNA 0.42 2 10464328 10465304
XM_039792688.1 True 6524 mRNA 0.49 15 10464322 10525085

Neighbor

gene id symbol gene type direction distance location
slc5a3a slc5a3,LOC104962291 coding downstream 21272 10435314 ~ 10443050 (-)
ddx3xb LOC101487926 coding downstream 35717 10412435 ~ 10428605 (-)
gpr180 gpr180,LOC102794014 coding downstream 65347 10389951 ~ 10398975 (-)
kpnb3 ipo5 coding downstream 177161 10275031 ~ 10287161 (-)
harbi1 harbi1 coding downstream 199200 10261823 ~ 10265122 (-)
LOC120554088 ptgfrn coding upstream 6742 10531827 ~ 10542635 (-)
LOC120554089 NA coding upstream 26864 10551949 ~ 10591069 (-)
LOC120554091 fam184a,LOC102306171,LOC101485268,LOC103474971,LOC108246794,LOC107092234,LOC102213346,LOC100706589 coding upstream 70004 10595089 ~ 10649932 (-)
LOC120554094 crygs,LOC103371281,LOC102797316,LOC106575813 coding upstream 184696 10709781 ~ 10711839 (-)
LOC120554102 LOC100700411,LOC102798594,LOC101483188,LOC101163295,LOC107380935 coding upstream 250873 10775958 ~ 10776875 (-)
LOC120554081 NA non-coding downstream 89391 10372988 ~ 10374931 (-)
G233685 LOC103356767 non-coding downstream 242147 10220878 ~ 10222175 (-)
G233675 LOC104966322 non-coding downstream 256847 10206152 ~ 10207475 (-)
LOC120554344 NA non-coding downstream 267946 10191223 ~ 10196376 (-)
LOC120554591 NA non-coding downstream 313906 10129535 ~ 10150416 (-)
G233855 NA non-coding upstream 200044 10725129 ~ 10725359 (-)
G233857 NA non-coding upstream 212550 10737635 ~ 10738167 (-)
G233858 NA non-coding upstream 213252 10738337 ~ 10738549 (-)
G233859 NA non-coding upstream 217989 10743074 ~ 10743463 (-)
G233872 LOC103371278,LOC105416747,LOC103151953,LOC102216808,LOC101483471,LOC108246769 non-coding upstream 249084 10774169 ~ 10775658 (-)
LOC120554082 NA other downstream 76389 10383688 ~ 10387933 (-)
G233703 atg13 other downstream 191463 10271069 ~ 10272859 (-)
arhgef7b arhgef7,LOC102205121,LOC101465658,LOC100696931 other downstream 287512 10152861 ~ 10176810 (-)
G233644 NA other downstream 421916 9965692 ~ 10042406 (-)
G233510 LOC103372156,LOC102206165,LOC102306683 other downstream 836381 9525789 ~ 9627941 (-)
G233954 NA other upstream 423383 10948468 ~ 10969110 (-)
LOC120554127 NA other upstream 512270 11037355 ~ 11046959 (-)
LOC120554131 NA other upstream 611542 11136627 ~ 11139245 (-)
spega LOC103358966 other upstream 863467 11388552 ~ 11441926 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other upstream 933852 11458937 ~ 11489477 (-)

Expression


Co-expression Network