LOC120554110


Basic Information

Item Value
gene id LOC120554110
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 10824907 ~ 10830260 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU317619
TACCTCTTCGTGCTGGAGCTACAATGTTATTTCATCCGTACTAGTAGTGCAGTACGAAAACAAAGAAGTTCAGATACAACATTATTTATATCTAGCATATGTGCGCATTGTAATAGACCCATACATAATATCTGTAAATACTGTCACAGCTGTTAAGACGCTAATTACGAGGTACGTATGGGCCAAAAGCACGCACTGCAACCAGTTTAACAGGAGCAGCACCCAGGACCCAGTGCTGTTTACAGGCTCCATGAGGAAGAACTTGGACCCTTTCACCCATCACACTGATGAAGACCTGTGGAAGGCTCTGGAGGAGGCTAGTATCCAATCAGCCTAGTATCCAATCAGCATACTCCAAAAGTTGAGTTTCTAGCTCATGTTGTCACGGCAACATGTGTCAGGCAGAC
>XR_005638316.1
TCTTCGTGCTGGAGCTACAATGTTATTTCATCCGTACTAGTAGTGCAGTACGAAAACAAAGAAGTTCAGATACAACATTATTTATATCTAGCATATGTGCGCATTGTAATAGACCCATACATAATATCTGTAAATACTGTCACAGCTGTTAAGACGCTAATTACGAGGTACGTATGGGCCAAAAGCACGCACTGCAACCAGTTTAACAGGAGCAGCACCCAGGACCCAGTGCTGTTTACAGGCTCCATGAGGAAGAACTTGGACCCTTTCACCCATCACACTGATGAAGACCTGTGGAAGGCTCTGGAGGAGGCTAGTATCCAATCAGCCTAGTATCCAATCAGCATACTCCAAAAATGCGTGCAGAGTTTCCGGACCACAACGGAGAAGTTCCTTTTCAATTTATCAATTCAATTCTAATTTCAATTCAGATTTTGAAAATGACAGCACCACCGAGGGATGGAACACTCATCCTCCAGTCTTCATGAGAGTTGAACCTTCACCTTAGCTTGCTGAGCTCTATGCAGCGCTTGGAAAGGCTCTAGTTGGAAGATGTATTTATTGTTCAAACTACAGGGGAGAGAAATTAAAAACTGTCGAGACAAAAGTGGGATTGAATCCTTCAATCTCAGATTGTTGAGTCAGTAACTTATCTCAGTGAGCTATTCCTAATTAATCAATTAAGTAATCAACAAATAATACATTAATCAACCAATTAACAGCTCAATTAGCAGATCAATCAACCAATTactcaatacattttatttgtcacatgaaatcaatTAGTCTACAAGGACAGAGTTTGAACAACAAATATTAGAATGGAAACTTGAAATGTCAGTTTCAAGAATAGCTCACTGAGATAAGCTACTGACTCAACCATCTGAGGTTGAAGGATCAAATCCCACACCATTTGTCTCAACAGTTTTTTAACTTCTCTCCTCTGAAATgtgaacaataaatacaacttCCAACCAGCACAGAGTCTCAGATCAGATAGCTCAGTGTGATAGAACGCTGGTTAGAGGACACGCAGGTCTTGGGTTCAATCACCCTGATGGACTGGTGTTTGTATCCTGCATTTCACagaacatttctttctttcctaaacccaaaaaTTCGTCTTAACTGCGTACTGTATTCGCTGGAGGTGGCGGCTGAGGTGGCGGCAGAGCGGAATAGGCATCAGcccttcacccaggagacccggGTTCACATCCAGTGTGCCCCGGTAGGATCTGCGCAAGGTAAGGTAGGCACCACCCCGAAGGTGGTGCCTACCTTAAGGGTGTGGTGCCCAAGGGAGCAGTGCCCACCAGCAACCCCAAGCCACCCCAGAGGGGGGAAACCCCCATGCCGCCCCTTCGGGGCGGCATGGGGGTTTCCCAAGTGTCATAACGGTGCGTTGCAACCCCGAAGGGGTTGCAACGCACCTTACCTTTTGCCGACTGCAACAATGAATTTTTTTCTCTAAGTGTCATAAGTACATCTCCagcctttcacccaggagaccagggttcgtgtcccacgtgtcatGGTTAAGTACTTTCCTAATCCCAACTGTCCTTGGCATCC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU317619 False 407 lncRNA 0.44 2 10827854 10830260
XR_005638316.1 True 1575 lncRNA 0.45 3 10824907 10830256

Neighbor

gene id symbol gene type direction distance location
LOC120554097 LOC100699868,LOC108246800,LOC102211082,LOC101482602,LOC102799187,LOC106525709 coding downstream 39054 10784874 ~ 10785853 (-)
LOC120554100 LOC103371276,LOC104950903,LOC100700136 coding downstream 42379 10780954 ~ 10782528 (-)
LOC120554102 LOC100700411,LOC102798594,LOC101483188,LOC101163295,LOC107380935 coding downstream 48032 10775958 ~ 10776875 (-)
LOC120554094 crygs,LOC103371281,LOC102797316,LOC106575813 coding downstream 113068 10709781 ~ 10711839 (-)
LOC120554091 fam184a,LOC102306171,LOC101485268,LOC103474971,LOC108246794,LOC107092234,LOC102213346,LOC100706589 coding downstream 174975 10595089 ~ 10649932 (-)
LOC120554104 NA coding upstream 24463 10854723 ~ 10867503 (-)
LOC120554111 u2af1,LOC102219527,LOC105917412,LOC103389252,LOC107380862,LOC101158751 coding upstream 55492 10885752 ~ 10899660 (-)
LOC120554115 NA coding upstream 101020 10931280 ~ 10947502 (-)
LOC120554116 NA coding upstream 118061 10948321 ~ 10980875 (-)
LOC120554119 NA coding upstream 136875 10967135 ~ 10989049 (-)
G233913 NA non-coding downstream 51 10818253 ~ 10824856 (-)
G233878 LOC101482024,LOC102799766,LOC102210491,LOC100699157,LOC103371275,LOC103151957 non-coding downstream 33143 10790360 ~ 10791764 (-)
G233876 LOC108246801,LOC102799488,LOC101482313,LOC102210781,LOC107380932,LOC101064696 non-coding downstream 36805 10786325 ~ 10788102 (-)
G233872 LOC103371278,LOC105416747,LOC103151953,LOC102216808,LOC101483471,LOC108246769 non-coding downstream 49249 10774169 ~ 10775658 (-)
G233859 NA non-coding downstream 81444 10743074 ~ 10743463 (-)
LOC120554109 NA non-coding upstream 7532 10837792 ~ 10848355 (-)
G233939 NA non-coding upstream 85714 10915974 ~ 10923816 (-)
LOC120554121 NA non-coding upstream 127650 10957910 ~ 10958290 (-)
G234024 NA non-coding upstream 210926 11041186 ~ 11094182 (-)
G234026 NA non-coding upstream 230551 11060811 ~ 11083168 (-)
si:ch211-132g1.7 ptgfrn,LOC104953994 other downstream 299822 10464322 ~ 10525085 (-)
LOC120554082 NA other downstream 436974 10383688 ~ 10387933 (-)
G233703 atg13 other downstream 552048 10271069 ~ 10272859 (-)
arhgef7b arhgef7,LOC102205121,LOC101465658,LOC100696931 other downstream 648097 10152861 ~ 10176810 (-)
G233644 NA other downstream 782501 9965692 ~ 10042406 (-)
G233954 NA other upstream 118208 10948468 ~ 10969110 (-)
LOC120554127 NA other upstream 207095 11037355 ~ 11046959 (-)
LOC120554131 NA other upstream 306367 11136627 ~ 11139245 (-)
spega LOC103358966 other upstream 558292 11388552 ~ 11441926 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other upstream 628677 11458937 ~ 11489477 (-)

Expression


Co-expression Network