G233954


Basic Information

Item Value
gene id G233954
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 10948468 ~ 10969110 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU317684
gttttgatGAGGAATCTGAAACTAATAATAGTGATCGCAGTAGGACTTGGATCATATTGTCTGTGGTATTGGtagcctgtgtttgtgttgttgctgctgtcatCATCACTGCCATCATGCTTagacaaaaaaatcacaacagTCTGTCACACAGGGAGGTGGCTGAGATGTCTCCAACTGCAATCCATGATACTATTAATCTGTCACACAGGGACTCTGAGGAGAACAAGACGGACAACACAAGCATCCAAGAACCTGATGAGGTCCATACGTGTGTAGTCACGCAGGACAATCAGATCAGAAAACGGACACCTCCTGAGAAAAGTCCAACAAGTGACAAGCCAGAGCCGTCACCTTCAATAGCAAGAAGACTTGATTTTGATCAGTGTCAACAATGTAACACAGAATAACCCTCAAGACTGCAGCACCAGTACTCAGACACTCAGACATAAACTAAAACATGTGAGAGAGTGTTTCCAAAAAAATaggttttatattttgtataccGTTCCATGTTTATATGATCtttttaataacatttcattatcatttttatgttttcacaTTGTTTGTATAATGGTCCTTTATTTAAGGaatgttaaacaaataaaaaatttgaTGCGAAAAGGTCACTTAAAATCTTTGCAGCGACGTAAGCTAAAAATAAGTTTATGAAAGGCCTGTTTCTTCCCGATTGCAGCTGGCCTCATCAACAAAGGCCCGGGACCCCCCTCTTACCCCCACTGGCACTGACTCTGTCCTCATCCACATCTGATGTCATGCGATACACTAACGCAATGAACTTTATACTTATTTATTAACATATGTGGTTATTGAGTTTTACCACTATGTCTAATTATCTCATTTTAGatgacatgtttttatttcctaTTGACAATTCTTTACTTCGCAC
>TU317688
AGAGCTGCATGAAGCCATTCTCCATGTTGGAGAATCCAACTCTCCTGAAGAGGCAGTAGTGTCCTGCTCGGCCACAGGTCGACCTGCTCCCACAGTTACACTGACTGTCCCTCACCGCAACTCTTCCAGTGTCACCAACACCAACGGTACAGTCACTGTCACCACTACAGCTGTGCTGCCTCgtctccatggcaacagcaCACAGGTTGGATGTGCAGTGCGAGTGCTCTCTGGTCCTCAGATAGAGGTGTTTACCATGATTCCTGAGATCAGACAGCCGTCTGCTGATGgttttgatGAGAAATCTTGGTCTGATAACAGTGATCACAATTTCACTGTGatccttgtgttgtctgtgGTAATGGCCGGTGTTTGTCTTGCTGTAATCATCACCGCCTGCATCTGGCTCATAAGAAAATATTGGAACCGTGTGTCACACAGGGACTCTGAGGAGAACAAGACACCACAGAAACCAACTAAAGATGATCATGAGCCCAAAACACCTTTAATGAGTCAAGAGAATGAGGTACGGCAACGGGGGtctact
>TU317694
GTCTAACCTCTCTGATAGAAACCCAGCAGACTGTGATGGCAGCAGTGGGAGAAGAGGCTCAGTTAAACTGTCAGCTGATGCAATCTAAAGATGTTCTGCAGGTCACATGGCAGAAACTATTACCTGAGGGGGAGAAGAATCTAGCTACTTACAACAAATACTTTGGTCAAAAGGTGAATGCTGGTTTTGAAGAGAAAGTGGAGTTTAAATGTGCTGGACTACAGAACAGCTCCATAGACATCAGGAAGGTGACGGAGCAGGATGAAGGATGCTATCGCTGTTTGTTTAACACCTACCCTGAAGGTGCTCTCACTGCTACAACCTGCCTCCAACTCTATGGTAAGAACCTAACTGTGTTATCAGAGAC
>TU317697
gttttgATGAGAAATCTAGGTCTGATAACAGTGATCACAATTTCACTTTGatccttgtgttgtctgtgGTAATGGCCGGTGTTTGTCTTGCTGTAATCATCACCGCCTGCATCTGGCTCATAAGAAAATATTGGAACCGTGTGTCACACAGGGACTCTGAGGAGAACAAGACACCACAGAAACCAACTAAAGATGATCATGAGCCCAAAACACCTTTAATGAGTCAAGAGAATGAGGTACGGCAACGGGGGtctact
>TU317708
TCAGACCCGATGGCGCTCCGTGCAGTCCTACAGTTCCTTTGTGCGTTGGGAGTCTTTCACAAAGGTCTAACCTCTCTGATAGAAACCCAGCAGACTGTGATGGCAGCAGTGGGAGAAGAGGCTCAGTTAAACTGTCAGCTGATGCAATCTAAAGAGGTTCTGCAGGTCACATGGCAGAAACTATTACCTGAGGGGGAGAAGAATCTAGCTACTTACAACAAATACTTTGGTCAAAAGGTGAATGCTGGTTTTGAAGAGAAAGTGGAGTTTAAATGTGCTGGACTACAGAACAGCTCCATAGACATCAGGAAGGTGACGGAGCAGGATGAAGGATGCTATCGCTGTTTGTTTAACACCTACCCTGAAGGTGCTCTCACTGCTACAACCTGCCTCCAACTCTATGGTAAGAACCTAACTGTGTTATCAGAGAC

Function

GO: NA

KEGG:

id description
ko00030 Pentose phosphate pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU317684 True 913 TUCP 0.39 5 10967423 10969110
TU317688 False 547 TUCP 0.50 6 10948468 10958632
TU317694 False 367 TUCP 0.45 2 10949523 10951480
TU317697 False 257 lncRNA 0.44 4 10948468 10951148
TU317708 False 431 TUCP 0.47 2 10949523 10950629

Neighbor

gene id symbol gene type direction distance location
LOC120554115 NA coding downstream 966 10931280 ~ 10947502 (-)
LOC120554111 u2af1,LOC102219527,LOC105917412,LOC103389252,LOC107380862,LOC101158751 coding downstream 48808 10885752 ~ 10899660 (-)
LOC120554104 NA coding downstream 80965 10854723 ~ 10867503 (-)
LOC120554097 LOC100699868,LOC108246800,LOC102211082,LOC101482602,LOC102799187,LOC106525709 coding downstream 162615 10784874 ~ 10785853 (-)
LOC120554100 LOC103371276,LOC104950903,LOC100700136 coding downstream 165940 10780954 ~ 10782528 (-)
LOC120554120 NA coding upstream 21439 10990549 ~ 10995360 (-)
LOC120554123 NA coding upstream 42122 11011232 ~ 11013638 (-)
LOC120554124 NA coding upstream 44885 11013995 ~ 11018662 (-)
LOC120554122 NA coding upstream 51723 11020833 ~ 11029361 (-)
LOC120554129 LOC103361269,LOC104942788,LOC103151927 coding upstream 126406 11095516 ~ 11101153 (-)
G233939 NA non-coding downstream 24652 10915974 ~ 10923816 (-)
LOC120554109 NA non-coding downstream 100113 10837792 ~ 10848355 (-)
G233918 NA non-coding downstream 117338 10829346 ~ 10831130 (-)
LOC120554110 NA non-coding downstream 118208 10824907 ~ 10830260 (-)
G233913 NA non-coding downstream 123612 10818253 ~ 10824856 (-)
G234024 NA non-coding upstream 72076 11041186 ~ 11094182 (-)
G234026 NA non-coding upstream 91701 11060811 ~ 11083168 (-)
G234032 NA non-coding upstream 182732 11151842 ~ 11152551 (-)
G234051 NA non-coding upstream 315682 11284792 ~ 11285090 (-)
G234063 NA non-coding upstream 336501 11305611 ~ 11306703 (-)
si:ch211-132g1.7 ptgfrn,LOC104953994 other downstream 423383 10464322 ~ 10525085 (-)
LOC120554082 NA other downstream 560535 10383688 ~ 10387933 (-)
G233703 atg13 other downstream 675609 10271069 ~ 10272859 (-)
arhgef7b arhgef7,LOC102205121,LOC101465658,LOC100696931 other downstream 771658 10152861 ~ 10176810 (-)
G233644 NA other downstream 906062 9965692 ~ 10042406 (-)
LOC120554127 NA other upstream 68245 11037355 ~ 11046959 (-)
LOC120554131 NA other upstream 167517 11136627 ~ 11139245 (-)
spega LOC103358966 other upstream 419442 11388552 ~ 11441926 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other upstream 489827 11458937 ~ 11489477 (-)
igfbp5a igfbp5,LOC103371819,LOC104928322,LOC101465019 other upstream 555272 11524382 ~ 11538321 (-)

Expression


Co-expression Network