XLOC_005042


Basic Information

Item Value
gene id XLOC_005042
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 337808 ~ 355555 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011052
GAGTTGTTGACTCgtctctagtccaaatatctcaacattcctaaatcaaaaagcatttttggACAGGAAAGCAGGTCTGCTGGTATTCACAAACCTTCCAAGAAGAGCCAAATATAGTTCTGCATCTGATAAGCAGCAGTAAAGCTGGTCACGTCATCACTTGTATCTGCAGCTCTTCTTGACCCTGTGTGAGAGATCATGAGAACACACTTCAGCTTCAGACTGTCCGACTGCAGGAGTTCAGTCTGTTTACATCTGCAGACGTGGAGAAACGCACACAGcagctcatttacacacacacacacacacacacacacacacaccaggagAGAGGTTTATATTGCAGAGTCAGTCTTTCAGCGCTCTTCATCTTCAGCAGTATCGTCATAATAATGTCTCAACAGCTTGTAAATCACAGACTTCATTATGAATCGTCAAGTTCTC
>TCONS_00011053
CTGCAAAAACTGCTTTCCTGCTCAGAGTTGTTGACTCgtctctagtccaaatatctcaacattcctaaatcaaaaagcatttttggACAGGAAAGCAGGTCTGCTGGTATTCACAAACCTTCCAAGAAGAGCCAAATATAGTTCTGCATCTGATAAGCAGCAGTAAAGCTGGTCACGTCATCACTGtgTGTATCTGCAGCTCTTCTTGACCCTGTGTGAGAGATCATGAGAACACACTTCAGCTTCAGACTGTCCGACTGCAGGAGTTCAGTCTGTTTACATCTGCAGACGTGGAGAAACGCACACAGcagctcatttacacacacacacacacacacacacacacacaccaggagAGAGGTTTATATTGCAGAGTCAGTCTTTCAGCGCTCTTCATCTTCAGCAGTATCGTCATAATAATGTCTCAACAGCTTGTAAATCACAGACTTCATTATGAATCGTCAAGTTCTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011052 False 444 lncRNA 0.43 3 337808 355531
TCONS_00011053 True 471 lncRNA 0.44 3 337808 355555

Neighbor

gene id symbol gene type direction distance location
XLOC_005041 pts coding downstream 22909 312448 ~ 314899 (-)
XLOC_005040 adprm coding downstream 46993 288108 ~ 290815 (-)
XLOC_005039 map2k4b coding downstream 50175 281166 ~ 287633 (-)
XLOC_005037 NA coding downstream 58473 250081 ~ 279335 (-)
XLOC_005038 NA coding downstream 72607 262396 ~ 265201 (-)
XLOC_005043 NA coding upstream 50632 406187 ~ 408631 (-)
XLOC_005044 hs3st3l coding upstream 60156 415711 ~ 431249 (-)
XLOC_005045 dhrs7cb coding upstream 99997 455552 ~ 464007 (-)
XLOC_005046 bsk146 coding upstream 194043 549598 ~ 558201 (-)
XLOC_005047 wu:fj29h11 coding upstream 204957 560512 ~ 628160 (-)
XLOC_005035 NA non-coding downstream 156999 180200 ~ 180809 (-)
XLOC_005034 NA non-coding downstream 162289 171286 ~ 175519 (-)
XLOC_005031 NA non-coding downstream 272048 64267 ~ 65760 (-)
XLOC_005057 NA non-coding upstream 716930 1072485 ~ 1085227 (-)
XLOC_005062 NA non-coding upstream 1097345 1452900 ~ 1453339 (-)
XLOC_005063 CU694266.1 non-coding upstream 1134917 1490472 ~ 1490588 (-)
XLOC_005067 NA non-coding upstream 1644464 2000019 ~ 2001490 (-)

Expression


Co-expression Network