G234253 (LOC103139183,LOC106940425,LOC106914874)


Basic Information

Item Value
gene id G234253
gene name LOC103139183,LOC106940425,LOC106914874
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 12278519 ~ 12293143 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU318106
AGATAAGTTACTGACTCAACAATCTGAGATTTCTTTTGAGAATTGACACAAGAAACTAGATTGAATCTGTTTTTATGttctttatttctgttgtcatcATCCTGTAGGAGCATTTGTCATCAGTACATCTCAAACATCGGAAAGTGTGCACACATCTACATGGTCTTTTAAATACACCAATACAGGCAAAGAGGGGCTGGGGAGGAGGGAGGCAGGAATATAGGAAGCACAGAAAAACACTGGAGGGGTAACTGACATCTGGGAACGGGGGAAAAGGGGGGGCAGAGAGAGTTTCACAATGGTTAGCAGTGAATGTGCTAAAACAGTTATGTTCTTTTTatccttttattttaaatgaatccCAAAAACTGTAAGTTGAGGGTTACTCCCATTCTTCCCATTTCTTCTTCGTTTCTGCTCTCGTTTCCTGTAAAGTTACTGGTTCAATCGCACAAAAGGGCCAAGTAGCTGCTCTTTTGATGGAATGTTTTCATATAAAGCTTCATGCtttccactttttgaaataaaCTTTGCCCATTCAAATACATTGTACAACCCGGTCTCTGCGAAAGGAGAAAGATCACTGGCGCACGAGAGGCCGTTTAGGCATCTGAAGATCTGACCATGAAGTATAGACACTAGAATGCATCCTGGCCATTTATACTCACACTGAAAAGTTTAAAGATTGCTCCAAATAGATCTAatttattcatcatttatttgCCATGCCAGCATAAAAGCATAGTTGTAGTCTAATACAACCACAGAGCTAATGTAAAACCAAATAAAAAGAGCAGCCCATTGgtttgtgaaaataaaaagaagggaaaaatCTATTGGAAAGCTAGCCTTTTAGCGCTTAATTCGACATAACTGCAGTGGTTATCCACATTTAAGTGCTAATAAGCCAGTGCGGCCACAGGGAACATACAAAACTGGAACAACTTTCACTACagtgacatatatatatatataaaaaaaagaaaacctaaCGAGCAAACAATTTGCCAAACAATTCAGCACATATCAGGAAATCATACGATtaaaaccaaccaaccaacaaaCGAAAATGAATGTCATGTCACGTTGTAAGCAGACATGTTTATCAGCCATTCTTTTGCAGGTACAGTTACAAGCCATGTTGCTGTAAATTAAGTCTCTCACACAGTTGATCTTTGAGACTAACGTCTAGTATCTAGTAGCTATTTCTTGCATTCAGAACCACGTAAATTCTGAATGAACATTATGCATGAGTTCACCTTACCATTTATCCCAAAACAAGTGGAatgtgatgcttttttttttttacgctttaAAATCACTGTACAAATGTTAAAACCGTCAATGCTTTCTTAGACAAGCACATCCACTCAAACCTTTAGCCGTCATCTAAGACTAAACAAAACGAGTCCATAACGAATGATTGAAAAATGAACGAGAAACAAATAAAGAGTGACTGGGTGTGACTCCCTTTTAAGGAGTGGGAATGAAGAATAATCTtagaattcagtttttttttttaaatcccattCGGAGGGCTGGAAGGGTCGCTGATAGACGAAGACAGTCAATTGACTACGACTGTAGAACCTGTTGggttaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcggggtcATGTTGCAGTGAAGGACCTTGGGAGAACACTGGATGCTTATGAGATTGATGGGAGGAATGGTGTGGGCTTCGCAGGGTGATGTGAATCCGTGGCAGCCCGCTCATAAGCCCTGCTTGGCCAGGGCAGCGGTGACATCCTGGGCCAGCGTGGAGAGCTGGGGCGACTCCAGCACGTTGATGCTGCCAGAGGAGGACAGGTGAGGGGAAGTGCCTCCCGTCCCGACCCCGGGGGAGTGGGTGATGATGATTTCAGCGCCGTGATCCACCCGAGCTTTGGCCGTTTCCCGGAAGCTCAGCTTGTGGCTCTCGATCTGATGGGtgcaggaaaaaataaaaataaaaagaagagtTGAGGTCAGGGGTGTATTCTCTTCTTTACAGAAACTGGCAGTGACAGGATGCTGTATTtgtgtgcttcttttttttttttttttttttttttttttttttcttcaacatcAAGTCTTTAGTCTGACATTATAAAGTTTCGATACCAGTGACTGTGCTCCACAAAGCCGTTTGTCA
>TU318107
AGATAAGTTACTGACTCAACAATCTGAGATTTCTTTTGAGAATTGACACAAGAAACTAGATTGAATCTGTTTTTATGttctttatttctgttgtcatcATCCTGTAGGAGCATTTGTCATCAGTACATCTCAAACATCGGAAAGTGTGCACACATCTACATGGTCTTTTAAATACACCAATACAGGCAAAGAGGGGCTGGGGAGGAGGGAGGCAGGAATATAGGAAGCACAGAAAAACACTGGAGGGGTAACTGACATCTGGGAACGGGGGAAAAGGGGGGGCAGAGAGAGTTTCACAATGGTTAGCAGTGAATGTGCTAAAACAGTTATGTTCTTTTTatccttttattttaaatgaatccCAAAAACTGTAAGTTGAGGGTTACTCCCATTCTTCCCATTTCTTCTTCGTTTCTGCTCTCGTTTCCTGTAAAGTTACTGGTTCAATCGCACAAAAGGGCCAAGTAGCTGCTCTTTTGATGGAATGTTTTCATATAAAGCTTCATGCtttccactttttgaaataaaCTTTGCCCATTCAAATACATTGTACAACCCGGTCTCTGCGAAAGGAGAAAGATCACTGGCGCACGAGAGGCCGTTTAGGCATCTGAAGATCTGACCATGAAGTATAGACACTAGAATGCATCCTGGCCATTTATACTCACACTGAAAAGTTTAAAGATTGCTCCAAATAGATCTAatttattcatcatttatttgCCATGCCAGCATAAAAGCATAGTTGTAGTCTAATACAACCACAGAGCTAATGTAAAACCAAATAAAAAGAGCAGCCCATTGgtttgtgaaaataaaaagaagggaaaaatCTATTGGAAAGCTAGCCTTTTAGCGCTTAATTCGACATAACTGCAGTGGTTATCCACATTTAAGTGCTAATAAGCCAGTGCGGCCACAGGGAACATACAAAACTGGAACAACTTTCACTACagtgacatatatatatatataaaaaaaagaaaacctaaCGAGCAAACAATTTGCCAAACAATTCAGCACATATCAGGAAATCATACGATtaaaaccaaccaaccaacaaaCGAAAATGAATGTCATGTCACGTTGTAAGCAGACATGTTTATCAGCCATTCTTTTGCAGGTACAGTTACAAGCCATGTTGCTGTAAATTAAGTCTCTCACACAGTTGATCTTTGAGACTAACGTCTAGTATCTAGTAGCTATTTCTTGCATTCAGAACCACGTAAATTCTGAATGAACATTATGCATGAGTTCACCTTACCATTTATCCCAAAACAAGTGGAatgtgatgcttttttttttttacgctttaAAATCACTGTACAAATGTTAAAACCGTCAATGCTTTCTTAGACAAGCACATCCACTCAAACCTTTAGCCGTCATCTAAGACTAAACAAAACGAGTCCATAACGAATGATTGAAAAATGAACGAGAAACAAATAAAGAGTGACTGGGTGTGACTCCCTTTTAAGGAGTGGGAATGAAGAATAATCTtagaattcagtttttttttttaaatcccattCGGAGGGCTGGAAGGGTCGCTGATAGACGAAGACAGTCAATTGACTACGACTGTAGAACCTGTTGggttaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcggggtcATGTTGCAGTGAAGGACCTTGGGAGAACACTGGATGCTTATGAGATTGATGGGAGGAATGGTGTGGGCTTCGCAGGGTGATGTGAATCCGTGGCAGCCCGCTCATAAGCCCTGCTTGGCCAGGGCAGCGGTGACATCCTGGGCCAGCGTGGAGAGCTGGGGCGACTCCAGCACGTTGATGCTGCCAGAGGAGGACAGGTGAGGGGAAGTGCCTCCCGTCCCGACCCCGGGGGAGTGGGTGATGATGATTTCAGCGCCGTGATCCACCCGAGCTTTGGCCGTTTCCCGGAAGCTCAGCTTGTGGCTCTCGATcataacATTCCCCCCTCCAGGAGTGTGGCTGGTGTTGCCCAGGGAGCCGACCTTGGCATGGGCCTTGTCTTTAAAGTCCAGCTTCACATTCTCAATGCGCACGTTACCCCCCCctggtctgtggcggatgTTGGACATGGAGCCACATTTGGCGGTGATGTGGCTCAAGTCGATCTTCTTGGTCTGGATTTGGACCTGTGGGGCAGCAGCAGAAAGCATGTGTTAacataaaagtgtaaaaaaaataaataaataaaaataaaaccctgaTGGAAACTACAGAAAGTAACAGACATGATGTGTTTTGTGGTGAAAAAAAGTTAAGTACGATTAAGTCAATCTAGAGACCCAG
>TU318109
GATTTTGTGATATATAAGTTTTTGTATTGTGGTTCTTTGCCCTTTCCCTTCTTTTGGTATATTATCAAGATCAgtgttgttgatgatgatgataagtGAGAGGTATCTGATGATGACCCTCATGCTGCACTGACACTCCAGACCCCCCCCAGCCGACTTCAAACTGACCCAAAGACGACTCGGCGACCTCTGAACATGTAGCTAGCAACTTGAGCGGATGAATTTATGGATTATGAATCAGCTTCATGAAGACGAATGGAGGACGTTATGAGACGGTTGCAGGTGGACTGGTGTTTACATGGTCCGTGGGAGCTGGAAGTCCGCAGATATACCGCCTCAGTGGatgggaagaagaagaggaggaaccTTCTAGATACAGACCAGCTGAAGGGACATCTTCTCTGAGCTGAAGCTCTGAGATTCCTATGGGGCTTTGGGAAGCTCTGATGTCGTCGCTCTGCTCTCCCGCTTCGACTGGAACAAGATCTGGGAGCCACTCACTCAGCGCTTCCATCGAGTCATTGCACTGGACTTCCTGGGCTTTGGCTTCAGCGACAAGCCAGGTCCCCACAGGTACTCTCATCTTCGAGCAGGCCAGTGTGGTGGGGGCCCTGGTGGCTCACTTGGGTCTGAGCAACCAGCGAGTGACTCTGGTGTCCCATGACTATGGAGACACTGTGGCCCTGGAGCTGCTCTTCAGGACTGACCAAAACAGCACAGGACACCCAAACCAGGACTGACCAAAACCGCCCAGGACACCTCATCGTTAACAGCCTGTGTCTTCCTAATGGAGGATTATTTCCAGAAACCCATTACCCACGTTTGCTGCAGAAGCGCACATGATCTACGGATCCCTGGACCCAGTCAACCCTCATCCTCAGTTGATCGGTCTTTACCAGTGAGTGCCCCCGCCTCTGATACTTAACCCTGGTTCAGATTATCTGTAGTACGCTCATCTCCTGCCGGCAGATCTTTGTTCAGCTCATTTGCTGGATGTAAATTAGGAAGAATTGCAGGGAAAAGTGCAGTTTTACAGATAATCTGAACTCTTTTctcattttctgctgttttctgtgATTTGAGCTGAACAACATGAAGTAGTCTCCATAAAGCATGTTGTTTGACTATGAAATGTGgac

Function

NR:

description
CREB-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU318106 False 2166 lncRNA 0.41 2 12278519 12284697
TU318107 True 2304 lncRNA 0.42 3 12281511 12284697
TU318109 False 1139 TUCP 0.49 9 12287920 12293143

Neighbor

gene id symbol gene type direction distance location
LOC120554168 LOC104928316,LOC103357968,LOC104957755 coding downstream 428696 11839717 ~ 11849823 (-)
LOC120554156 LOC104957759,LOC101074451,LOC100697446,LOC103389560 coding downstream 554380 11718181 ~ 11724139 (-)
LOC120554155 ccnyl1,LOC103374641,LOC104957757,LOC101466371,LOC100696912 coding downstream 563369 11708327 ~ 11715150 (-)
tns1a NA coding downstream 594086 11567571 ~ 11684433 (-)
LOC120554150 NA coding downstream 776038 11470451 ~ 11502481 (-)
obsl1a obsl1,LOC102777652,LOC100691457 coding upstream 75253 12368396 ~ 12383014 (-)
LOC120554061 LOC101475634,LOC102213813,LOC107377203,LOC108242213,LOC106525271 coding upstream 309101 12602244 ~ 12644357 (-)
filip1l filip1l,LOC100693076,LOC102798342,LOC102213048 coding upstream 504701 12797844 ~ 12885098 (-)
LOC120554312 NA coding upstream 658278 12951421 ~ 12954215 (-)
LOC120554795 NA coding upstream 660963 12954106 ~ 12959563 (-)
G234238 myl1,LOC101075868,LOC104929359 non-coding downstream 8450 12200076 ~ 12270069 (-)
G234240 NA non-coding downstream 65910 12210934 ~ 12212609 (-)
G234225 NA non-coding downstream 77091 12122240 ~ 12201428 (-)
G234194 NA non-coding downstream 456017 11798563 ~ 11822502 (-)
G234181 NA non-coding downstream 593352 11684622 ~ 11685167 (-)
G234311 NA non-coding upstream 65620 12358763 ~ 12361269 (-)
LOC120554060 NA non-coding upstream 109846 12402989 ~ 12424938 (-)
G234328 NA non-coding upstream 139704 12432847 ~ 12434743 (-)
G234330 NA non-coding upstream 143853 12436996 ~ 12487330 (-)
G234333 NA non-coding upstream 194762 12487905 ~ 12489008 (-)
igfbp5a igfbp5,LOC103371819,LOC104928322,LOC101465019 other downstream 740198 11524382 ~ 11538321 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other downstream 789042 11458937 ~ 11489477 (-)
spega LOC103358966 other downstream 836593 11388552 ~ 11441926 (-)
LOC120554131 NA other downstream 1139274 11136627 ~ 11139245 (-)
LOC120554127 NA other downstream 1231560 11037355 ~ 11046959 (-)
G234405 NA other upstream 659947 12953090 ~ 12954125 (-)
arhgap1 arhgap1,LOC101474800,LOC102196105 other upstream 1901169 14194312 ~ 14290043 (-)
G234898 NA other upstream 2554691 14847834 ~ 14849737 (-)
LOC120554377 LOC103355861 other upstream 2673173 14966316 ~ 15013814 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other upstream 3955551 16248694 ~ 16288150 (-)

Expression


Co-expression Network