G234300 (obsl1)


Basic Information

Item Value
gene id G234300
gene name obsl1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 12375342 ~ 12376277 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU318182
CTTGACACTAAGCTGGAAAAAGACAGAGTCTCCATCTGTTTCACAGACATACTCTCCGCCATCCTCCACTGACCCGTTGAGTATAGTCAGCCTCCTGTAAGGGCCCTCGCATATGAGCTGGACGGTGTCGCTTTCCTCCACCTCCTGGCCGTCTTTGAACCACCGCACCCTCCCACTGGAACGAGACAACTCGCACTGCAGGTGGATCTCCTCTGAGATAAAGCTCTCCATCACAACATCATCCTTAGGTTCCACAATCATCACTGGAGGCTCTGTGTTTGTAGTTATAGAAAGCAGAGTGGCCTCAAGTCAGATTCCTAATGTagcttatgtgtgtgtaaaaatgcaTTAAGTGAGAATGTTCTGCACTTCATTGGCAAATCTACGTGTCTTGAAACACTACTCGAAACCACCTCAGTCATAAAGGTCCTTATACCTCTAACATTGACAGTGAACTCCACGCTGTTGTTTCCGGCCTGGCAGGTGTAGCTGCCAGCATCGGAGGTTTCTGCAGAGCGTATGATCAGCCTCCTCATGGTTCCCTCTGCCTGCAGAGTGATGTTGTCAGTGGGCTGGATCTCACAGCCATCCTTATACCTAGTACACACCAAATCACACTCAGACAACTGTAAAACACAGGGTTTCAGGTAACGAACCAAAATAATAAAACTCAAAACTGCCTATTTAAGTGATCAGTGATACGAtatgtgaaaaacaacacagaatcCTTAATAAATAGAATTTGAAAACAGAGCATAAATAGAAGCATCCGTTGATCATTTTCATATCCATTTTTCAAAAGAGGAATTTACTCGTCTTACCACACAACTTTGGCATCGTCGGTGGAGACGTGGCATAGCAGCACCACGGGGTCCAGCTCCATGCTGCTCTTATGGAGCTCCTCCTCTGGAACCGGACTGAACTCCACAGAAGGAC

Function

symbol description
obsl1 Involved in several processes, including positive regulation of dendrite morphogenesis; protein localization to Golgi apparatus; and regulation of mitotic nuclear division. Located in Golgi apparatus; centrosome; and perinuclear region of cytoplasm. Part of 3M complex. Implicated in 3-M syndrome.

NR:

description
PREDICTED: obscurin-like protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU318182 True 936 lncRNA 0.46 1 12375342 12376277

Neighbor

gene id symbol gene type direction distance location
LOC120554148 map2,LOC106530705,LOC103139183,LOC106940425,LOC106914874,LOC103389551,LOC103357963,LOC102289154 coding upstream 90710 12218113 ~ 12284632 (+)
acadl acadl coding upstream 158460 12210994 ~ 12216882 (+)
mylz3 LOC101075868,LOC104929359 coding upstream 166748 12205100 ~ 12208594 (+)
lancl1 lancl1 coding upstream 173960 12189498 ~ 12201382 (+)
si:ch211-93g23.2 NA coding upstream 538205 11833257 ~ 11837137 (+)
LOC120554055 LOC103358968 coding downstream 38763 12415040 ~ 12441685 (+)
LOC120554057 LOC103358968,LOC105923069 coding downstream 73447 12449724 ~ 12468465 (+)
LOC120554056 LOC103358968,LOC105923069 coding downstream 96057 12472334 ~ 12490385 (+)
LOC120554054 LOC100692262,LOC101156309 coding downstream 118485 12494762 ~ 12522233 (+)
ccdc28a ccdc28a coding downstream 403247 12779524 ~ 12784322 (+)
G234299 obsl1 non-coding upstream 119 12374950 ~ 12375223 (+)
G234298 obsl1,LOC100691457,LOC102777652 non-coding upstream 1282 12373786 ~ 12374060 (+)
G234297 obsl1,LOC102777652,LOC100691457 non-coding upstream 1650 12373423 ~ 12373692 (+)
G234295 obsl1,LOC102777652 non-coding upstream 2723 12371291 ~ 12372619 (+)
LOC120554173 NA non-coding upstream 530955 11842376 ~ 11844387 (+)
G234301 obsl1,LOC100691457,LOC102777652 non-coding downstream 410 12376687 ~ 12376962 (+)
LOC120554062 NA non-coding downstream 149626 12525903 ~ 12658477 (+)
G234353 LOC104946485,LOC107377203,LOC103358972,LOC105918555 non-coding downstream 263260 12639537 ~ 12643868 (+)
G234369 NA non-coding downstream 469912 12846189 ~ 12846545 (+)
G234372 NA non-coding downstream 508378 12884655 ~ 12885170 (+)
LOC120554058 obsl1,LOC102777652 other upstream 6121 12358027 ~ 12369221 (+)
LOC120554357 NA other upstream 18165 12299632 ~ 12357177 (+)
LOC120554149 erbb4,LOC102292440,LOC101467929,LOC100701577 other upstream 222902 11852389 ~ 12152440 (+)
G234095 NA other upstream 979996 11393664 ~ 11395346 (+)
G234085 mest other upstream 995239 11362541 ~ 11380103 (+)
LOC120554049 ect2l other downstream 410364 12786641 ~ 12797654 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other downstream 626686 13002963 ~ 13025520 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other downstream 793093 13169370 ~ 13202812 (+)
G234651 NA other downstream 1739582 14115859 ~ 14144870 (+)
LOC120554715 LOC103355859,LOC104964875 other downstream 2430250 14806527 ~ 14910075 (+)

Expression


Co-expression Network