G234425 (tsc22d1,LOC106531085,LOC102196627)


Basic Information

Item Value
gene id G234425
gene name tsc22d1,LOC106531085,LOC102196627
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 13002963 ~ 13025520 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU318345
ggggggggggggGGGGCAATGTGAACCTTGAAGAGAACGGTGTTCTCGAAGCGAACAATGAGGCACAGCTAATATATATATCTCGTAATCCTTTACAACCCCCCGCCACGCTCAACCCGGAAAATCAAGAAGACGTTACCATCGTCTTCGGATAAAGAAAAACGTTAGCTGGGCCGTCTGACTGCCATTCCAGATGAGTCGTACACATCTTAGTAGTTCGTCCACTGTTAATATCGTCTGAAAGTGCATGGAACGcagcacaacaaaaataaaaaaaataaaaatcaaatgtcaaacaaaactgaagtgtgTGCAGATGGACAGTGCTGGGTtgaggtgtgggtgtgtgtggggggggggggggccaaaGATGATGGCACAATTTCCACAGGTCACACAGCAAGGGATTCGACAGCACTGACAAGAGCGTGCAGCATACTCCCACTCGATTGGCCGGACCCTGCGTTAGCTCCTTCCTCCGCTGGTGGCTCTGACCAATGGCAGCGGACTGTCAGGTTCCTGTCAGCTCTGTCATTCCGCTCATCGACACTATATTGAAGACGACGATGGTCTGAGGCAGGTAAtaaaagcagacacacacacacacgcacgcacgcacacacacacacgcacacacacacaccgtgcaATTGCAAAGTCTTTCAGTTCAACTAAatgtgcaacaacaacaaaaattgtCCTCCGGTTCAGCGGACGTGTGCCCTCCTTGAGACGGTGGCATGTGTGTTGATGTTAGAGTCAGTTCACAGTATGGCAAAACTTCtatctcctccttttcttcttccttccaTTCCCCCTATTTCTCAtcctctggggggggggggttctccAGTGTGCCGTTTCTGTGTTACGCAGATGTGCCGGAGCTCTGTGTGGAAGGGAGGACCGGTGTGGTTCCGGCCGCGACCGGAGGCTGGGCAGCGCCATTCGGGGAGCCGCCAGTTTCTGTCTGTGCCTGAAACTGAGCCATTTGCTCGGGGCTGGCCAGGTTCTTGAGCAGGTtgttctcctgctccagctgagTGTTGCGCTCGATCAGCTCTTTAATCTGCTCCTTCAACACCTCCACCTCCTCGCGCACGGCGTACATGAGGTGGCTCTTCACCAGGTCCTGAGGGACggagggaagaagagagatTTGGTTAGCTGTGTAATTTCCATTTCCGTTTGAGTTTGAGGCTATGAACTCCTTGTTACACAACAAAACATATACAAAAATGCCATATGCTTacatttttaacccttgtgttttccacgggtcaaat
>TU318346
AATTACGCCTATGATTTAAAGTAATACTATATGGGGAGATTAAAAAGTAGACTCAATGTGTATTcatgtgtgtatacatttggTATGTCATATGGACTATTAACGTATGTTTGCAtgaaagtaggctacttgtctcACTTTTCTTTTGTAATACAGTTTTAAATGCTATAGTAAAAAATACTTAATGTAACGATCGCCATATGAATAGAATAGGTGTTTTTCCTCACAGTCGCCTATTATTCACTTTGAAACCAGCTTTTAATTAGAGACATCTACATAGCCTATGTatgaatgcatgaatgaatcattttattattgtgtcatgCACACAAAAAGTATGCCCAGCCCAAACGGGCTTACAAGACACCATTACTTATAGCAGGGGACCAAATACCAAAATAGCAACATAAATTAAACATACAAACCTTCTTGTCTTTTTGCCATGCTTTAGAAACAAAAGTCGCCAAATTACATCTATTAAATCTAAACAACCACTCCATTTGGTCATCATCAGTACACCAGAACATTtgtaatataaaacacaaagagaGGATCACTGATACTGTGTAAGCTAAATActacattttacacacacaaaaaaacaaacatcaaacaCACGTCGTAATTAAAGCGTTTGCTATGGTTTTCAGCTCGGCTTCACATGACGTCGCCCTATATTTCTGCGCGCTCCCGTTTGCGCGTCCTCGCTACCAGCAATccctaatacatccatgtcagagtgatagagaaagacatggCTCTGATCCATGTCAGGTCCTAtgaatgtataataataataataacggaAGTTCCACATGCGGTAAGATGGCTGTAAGAGGGTTCGGTCATATATAACCAATCAGAGGTCTACATTGACGCAGGTTACGTATTTATATCATTACAGTTCTGCGCATGTGTAATGAGGTCTAGTGAGGAAGCAGCAGAATGTCTGGGTTAACCACGGATGTTAGAACATtagaattatattatattaacagGGTTAACTGGGAAGCAATGAGGGTTATTTATTAGCTTTAAAATGTTGAGTAGAGAGAAAGCcagctgtatttatttttatatattgtggAATTATATGGTTTATTTCTGGCCAACCTACATTTTTGCCTTAATTTAATGACTTAAATCCAGATTTTTATGGATTCTAGAGGGAGAAAAGGCATACATTTATGCCTAAAATTAAAACTTGTATACATATTTCTGAAGAATGCACCAATTGTCTTCTATGAAACCTGCTGGATAAGATCGGTCAGACTTGTACTTAAAACCacgaaaaaaaataacagtccaggttttacatttttctttttattcgaGGTGCAACTGTCTAGTGCAATTGTAACGTCACATTTGTGATGGGCTGAGGAACATGCACAAAACATCGACATACTTCTGCTaggcctttttttccccccttgccaagtgtaattatggtgcTCAGCGCTCCAGTTGCACAACGAGCCACACAAAACACTTGGCtgtacaaaagacaaaaaaaaagaaaccatcgtcattcatgaaaacaaacaaacaatatcgCATGTCCCCAAGCGGTCAAACAGTCCAGAGAATTTGAGCATTTGAGATAAGCGACGGCAGAGGAGAGTTTGCATACAGTACAATGCCGTGTGTCACTGCAGGAGAGACAGCATCTTAGTGTCGAGGGAAATAATCCTTGTGTTCCCAACCTGAGTAATGACATCACAGGTAGTTTAAAACCTGGCaaaaccatagatatatatatatatatttacacacatttatatacacatattgaataaaacaactaaaaaagcttttatatatgtatctatGGTTAGAAACCAGGCACTTGAATTGGAAATTTTGAATCTGTACAAAGTTCATTACTGAGAAACAGTCATGTCCTACTTATTTGCCTTTCcatcaattctttttttttttttttttttttttaacggatCACTAGGACATTAATCACATCAACAAGAGCGGAAACATTGAAACGAACAAACCTTTCGTACAAAAACCTTGATTCCCTGCATTAATGTCGAATGCTCCATCCAAGACCAGGGAAGAGAGTGCGTTGAGGGGGCAATGTGAACCTTGAAGAGAACGGTGTTCTCGAAGCGAACAATGAGGCACAGCTAATATATATATCTCGTAATCCTTTACAACCCCCCGCCACGCTCAACCCGGAAAATCAAGAAGACGTTACCATCGTCTTCGGATAAAGAAAAACGTTAGCTGGGCCGTCTGACTGCCATTCCAGATGAGTCGTACACATCTTAGTAGTTCGTCCACTGTTAATATCGTCTGAAAGTGCATGGAACGcagcacaacaaaaataaaaaaaataaaaatcaaatgtcaaacaaaactgaagtgtgTGCAGATGGACAGTGCTGGGTtgaggtgtgggtgtgtgtggggggggggggggccaaaGATGATGGCACAATTTCCACAGGTCACACAGCAAGGGATTCGACAGCACTGACAAGAGCGTGCAGCATACTCCCACTCGATTGGCCGGACCCTGCGTTAGCTCCTTCCTCCGCTGGTGGCTCTGACCAATGGCAGCGGACTGTCAGGTTCCTGTCAGCTCTGTCATTCCGCTCATCGACACTATATTGAAGACGACGATGGTCTGAGGCAGGTAAtaaaagcagacacacacacacacgcacgcacgcacacacacacacgcacacacacacaccgtgcaATTGCAAAGTCTTTCAGTTCAACTAAatgtgcaacaacaacaaaaattgtCCTCCGGTTCAGCGGACGTGTGCCCTCCTTGAGACGGTGGCATGTGTGTTGATGTTAGAGTCAGTTCACAGTATGGCAAAACTTCtatctcctccttttcttcttccttccaTTCCCCCTATTTCTCAtcctctggggggggggggttctccAGTGTGCCGTTTCTGTGTTACGCAGATGTGCCGGAGCTCTGTGTGGAAGGGAGGACCGGTGTGGTTCCGGCCGCGACCGGAGGCTGGGCAGCGCCATTCGGGGAGCCGCCAGTTTCTGTCTGTGCCTGAAACTGAGCCATTTGCTCGGGGCTGGCCAGGTTCTTGAGCAGGTtgttctcctgctccagctgagTGTTGCGCTCGATCAGCTCTTTAATCTGCTCCTTCAACACCTCCACCTCCTCGCGCACGGCGTACATGAGGTGGCTCTTCACCAGGTCCATTGCTTGTTCAATCTTGTTGTCGATGGCCACCACACTTGCACCGGAAGAGCTGAAAaggggaaagaagaaaaaaaaattgatgttGATGTGAATACTGCAGGTTGAATTTGAAACTGTCGTCCATCGAGGGTTTAATAGCATAGACTGCCATTTGCGAGATTATGCtgacaaaacacaaataaaaaaaaaaaaaaaaaaaaaaaaaagcccgaGGTATCACATTATGAAGctgtcatttgcaaaacaaACTTGATATTAATTCAGAGGAAATCTCAATTTAGCGTCTGCAATAAAGCAAACGGGAGGTCGGGAAGGCAGGCTTTGACTTTGATGGCGGAGAATCAATGAGCCAACATTTCATGCACGGAGCCTCGCTTTGAATCGAGCCCACGTCGCAAATAAGATGAGTGAGAGAATGCGTCGAAAAAGCCCGGTGGTGACATTAACGTTACCTATTGTCGAGGCCGACTGATGCACTCTCCTTTCCGAGCACGGAGGACAGAAACGATATCGAGAAATTCCTCAGATGACAAACGCCAAGATCCATCGCCACCGTATAACATTGGGAGTTCATGCTATCCTGCCCATTAAAACCCCCGAAGGCGATTCTTCGGCTGTGCAAACTGGAAGTCCAGTGgtataaaagtagaaaaaataGCGCATTATTGAGGACAGGATGACGGGGTCTGCTCTCCGGGGCGACCGTGGAGCTCGCAGCCGGGACAGAGCACACAAAAGACTGCAGCTCCGCGCA
>TU318348
ggggggggggggGGGGCAATGTGAACCTTGAAGAGAACGGTGTTCTCGAAGCGAACAATGAGGCACAGCTAATATATATATCTCGTAATCCTTTACAACCCCCCGCCACGCTCAACCCGGAAAATCAAGAAGACGTTACCATCGTCTTCGGATAAAGAAAAACGTTAGCTGGGCCGTCTGACTGCCATTCCAGATGAGTCGTACACATCTTAGTAGTTCGTCCACTGTTAATATCGTCTGAAAGTGCATGGAACGcagcacaacaaaaataaaaaaaataaaaatcaaatgtcaaacaaaactgaagtgtgTGCAGATGGACAGTGCTGGGTtgaggtgtgggtgtgtgtggggggggggggggccaaaGATGATGGCACAATTTCCACAGGTCACACAGCAAGGGATTCGACAGCACTGACAAGAGCGTGCAGCATACTCCCACTCGATTGGCCGGACCCTGCGTTAGCTCCTTCCTCCGCTGGTGGCTCTGACCAATGGCAGCGGACTGTCAGGTTCCTGTCAGCTCTGTCATTCCGCTCATCGACACTATATTGAAGACGACGATGGTCTGAGGCAGGTAAtaaaagcagacacacacacacacgcacgcacgcacacacacacacgcacacacacacaccgtgcaATTGCAAAGTCTTTCAGTTCAACTAAatgtgcaacaacaacaaaaattgtCCTCCGGTTCAGCGGACGTGTGCCCTCCTTGAGACGGTGGCATGTGTGTTGATGTTAGAGTCAGTTCACAGTATGGCAAAACTTCtatctcctccttttcttcttccttccaTTCCCCCTATTTCTCAtcctctggggggggggggttctccAGTGTGCCGTTTCTGTGTTACGCAGATGTGCCGGAGCTCTGTGTGGAAGGGAGGACCGGTGTGGTTCCGGCCGCGACCGGAGGCTGGGCAGCGCCATTCGGGGAGCCGCCAGTTTCTGTCTGTGCCTGAAACTGAGCCATTTGCTCGGGGCTGGCCAGGTTCTTGAGCAGGTtgttctcctgctccagctgagTGTTGCGCTCGATCAGCTCTTTAATCTGCTCCTTCAACACCTCCACCTCCTCGCGCACGGCGTACATGAGGTGGCTCTTCACCAGGTCCATTGCTTGTTCAATCTTGTTGTCGATGGCCACCACACTTGCACCGGAAGAGCTATTGTCGAGGCCGACTGATGCACTCTCCTTTCCGAGCACGGAGGACAGAAACGATATCGAGAAATTCCTCAGATGACAAACGCCAAGATCCATCGCCACCGTATAACATTGGGAGTTCATGCTATCCTGCCCATTAAAACCCCCGAAGGCGATTCTTCGGCTGTGCAAACTGGAAGTCCAGTGgtataaaagtagaaaaaataGCGCATTATTGAGGACAGGATGACGGGGTCTGCTCTCCGGGGCGACCGTGGAGCTCGCAGCCGGGACAGAGCACACAAAAGACTGCAGCTCCGCGCA
>TU318349
ggggggggggggGGGGCAATGTGAACCTTGAAGAGAACGGTGTTCTCGAAGCGAACAATGAGGCACAGCTAATATATATATCTCGTAATCCTTTACAACCCCCCGCCACGCTCAACCCGGAAAATCAAGAAGACGTTACCATCGTCTTCGGATAAAGAAAAACGTTAGCTGGGCCGTCTGACTGCCATTCCAGATGAGTCGTACACATCTTAGTAGTTCGTCCACTGTTAATATCGTCTGAAAGTGCATGGAACGcagcacaacaaaaataaaaaaaataaaaatcaaatgtcaaacaaaactgaagtgtgTGCAGATGGACAGTGCTGGGTtgaggtgtgggtgtgtgtggggggggggggggccaaaGATGATGGCACAATTTCCACAGGTCACACAGCAAGGGATTCGACAGCACTGACAAGAGCGTGCAGCATACTCCCACTCGATTGGCCGGACCCTGCGTTAGCTCCTTCCTCCGCTGGTGGCTCTGACCAATGGCAGCGGACTGTCAGGTTCCTGTCAGCTCTGTCATTCCGCTCATCGACACTATATTGAAGACGACGATGGTCTGAGGCAGGTAAtaaaagcagacacacacacacacgcacgcacgcacacacacacacgcacacacacacaccgtgcaATTGCAAAGTCTTTCAGTTCAACTAAatgtgcaacaacaacaaaaattgtCCTCCGGTTCAGCGGACGTGTGCCCTCCTTGAGACGGTGGCATGTGTGTTGATGTTAGAGTCAGTTCACAGTATGGCAAAACTTCtatctcctccttttcttcttccttccaTTCCCCCTATTTCTCAtcctctggggggggggggttctccAGTGTGCCGTTTCTGTGTTACGCAGATGTGCCGGAGCTCTGTGTGGAAGGGAGGACCGGTGTGGTTCCGGCCGCGACCGGAGGCTGGGCAGCGCCATTCGGGGAGCCGCCAGTTTCTGTCTGTGCCTGAAACTGAGCCATTTGCTCGGGGCTGGCCAGGTTCTTGAGCAGGTtgttctcctgctccagctgagTGTTGCGCTCGATCAGCTCTTTAATCTGCTCCTTCAACACCTCCACCTCCTCGCGCACGGCGTACATGAGGTGGCTCTTCACCAGGTCCATTGCTTGTTCAATCTTGTTGTCGATGGCCACCACACTTGCACCGGAAGAGCTGAAAaggggaaagaagaaaaaaaaattgatgttGATGTGAATACTGCAGGTTGAATTTGAAACTGTCGTCCATCGAGGGTTTAATAGCATAGACTGCCATTTGCGAGATTATGCtgacaaaacacaaataaaaaaaaaaaaaaaaaaaaaaaaaagcccgaGGTATCACATTATGAAGctgtcatttgcaaaacaaACTTGATATTAATTCAGAGGAAATCTCAATTTAGCGTCTGCAATAAAGCAAACGGGAGGTCGGGAAGGCAGGCTTTGACTTTGATGGCGGAGAATCAATGAGCCAACATTTCATGCACGGAGCCTCGCTTTGAATCGAGCCCACGTCGCAAATAAGATGAGTGAGAGAATGCGTCGAAAAAGCCCGGTGGTGACATTAACGTTACCTATTGTCGAGGCCGACTGATGCACTCTCCTTTCCGAGCACGGAGGACAGAAACGATATCGAGAAATTCCTCAGATGACAAACGCCAAGATCCATCGCCACCGTATAACATTGGGAGTTCATGCTATCCTGCCCATTAAAACCCCCGAAGGCGATTCTTCGGCTGTGCAAACTGGAAGTCCAGTGgtataaaagtagaaaaaataGCGCATTATTGAGGACAGGATGACGGGGTCTGCTCTCCGGGGCGACCGTGGAGCTCGCAGCCGGGACAGAGCACACAAAAGACTGCAGCTCCGCGCA

Function

symbol description
tsc22d1 Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Is expressed in several structures, including forerunner cell group; mucus secreting cell; nervous system; pronephric duct; and pronephric mesoderm. Orthologous to human TSC22D1 (TSC22 domain family member 1).

NR:

description
PREDICTED: TSC22 domain family protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU318345 False 1286 TUCP 0.51 2 13002963 13021988
TU318346 True 3965 lncRNA 0.43 2 13018627 13025520
TU318348 False 1486 TUCP 0.53 4 13002963 13025520
TU318349 False 1889 TUCP 0.50 3 13002963 13025520

Neighbor

gene id symbol gene type direction distance location
wbp4 wbp4 coding upstream 11517 12986986 ~ 12991446 (+)
jagn1b jagn1,LOC103376239,LOC102797060 coding upstream 51603 12946562 ~ 12951360 (+)
LOC120554719 LOC104966735,LOC102306959,LOC103389234,LOC102212482 coding upstream 61574 12921143 ~ 12941389 (+)
si:dkeyp-34c12.1 NA coding upstream 106521 12893087 ~ 12896442 (+)
ccdc28a ccdc28a coding upstream 218641 12779524 ~ 12784322 (+)
LOC120554796 NA coding downstream 26843 13052363 ~ 13145218 (+)
dmd dmd,LOC101067548 coding downstream 190691 13216211 ~ 13686604 (+)
arl6ip6 NA coding downstream 1280449 14305969 ~ 14325821 (+)
cars2 cars2 coding downstream 1394489 14420009 ~ 14434616 (+)
LOC120554078 LOC105905688,LOC102213723,LOC102296852 coding downstream 1458648 14484168 ~ 14486243 (+)
G234401 NA non-coding upstream 50987 12951582 ~ 12951976 (+)
G234372 NA non-coding upstream 117793 12884655 ~ 12885170 (+)
G234369 NA non-coding upstream 156418 12846189 ~ 12846545 (+)
LOC120554062 NA non-coding upstream 344486 12525903 ~ 12658477 (+)
G234353 LOC104946485,LOC107377203,LOC103358972,LOC105918555 non-coding upstream 359095 12639537 ~ 12643868 (+)
G234485 NA non-coding downstream 159995 13185515 ~ 13185809 (+)
G234482 NA non-coding downstream 177395 13202915 ~ 13205979 (+)
G234561 NA non-coding downstream 699726 13725246 ~ 13725480 (+)
G234562 NA non-coding downstream 700558 13726078 ~ 13726690 (+)
G234571 NA non-coding downstream 720550 13746070 ~ 13749721 (+)
LOC120554049 ect2l other upstream 205309 12786641 ~ 12797654 (+)
LOC120554058 obsl1,LOC102777652 other upstream 633742 12358027 ~ 12369221 (+)
LOC120554357 NA other upstream 645786 12299632 ~ 12357177 (+)
LOC120554149 erbb4,LOC102292440,LOC101467929,LOC100701577 other upstream 850523 11852389 ~ 12152440 (+)
G234095 NA other upstream 1607617 11393664 ~ 11395346 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other downstream 143850 13169370 ~ 13202812 (+)
G234651 NA other downstream 1090339 14115859 ~ 14144870 (+)
LOC120554715 LOC103355859,LOC104964875 other downstream 1781007 14806527 ~ 14910075 (+)
LOC120554227 NA other downstream 2003318 15028838 ~ 15042444 (+)
LOC120554234 NA other downstream 3363177 16388697 ~ 16612671 (+)

Expression


Co-expression Network