LOC120554638 (tmem47,LOC104936888,LOC106530717,LOC102201289)



Basic Information


Item Value
gene id LOC120554638
gene name tmem47,LOC104936888,LOC106530717,LOC102201289
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 13169370 ~ 13202812 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>TU318413
GGTGCCATAGGCGCAGCGTCCGTCCAGCGCGCAACGCAGGCGGCTGCGGcggcaccaccaccaccaccaccagcagcagcagcaacaacactaGACTTCCCCGCCCGACTTTCgcatacactcacacaccttTGGAAAGagtacatccacacacacacacacacacacacacacgtcggcATCCTTCCCGGGTTTTTAAACCGGTCTTCGACTCTCCAGCCGCGCCATGTCGTCTGCTGTCACCGAGACG
>XM_039793655.1
GACGTCAGCGCTGTAAAACGTTAGAGATCTCCGGTGCGCGGCGGCAGCGGTGCCATAGGCGCAGCGTCCGTCCAGCGCGCAACGCAGGCGGCTGCGGcggcaccaccaccaccaccaccagcagcagcagcaacaacactaGACTTCCCCGCCCGACTTTCgcatacactcacacaccttTGGAAAGagtacatccacacacacacacacacacacacacacgtcggcATCCTTCCCGGGTTTTTAAACCGGTCTTCGACTCTCCAGCCGCGCCATGTCGTCTGCTGTCACCGAGACGGAGGAGTCGGCGCGCAGCTCCCCGATGACGCCGCTGAAGCTGGTCGGGCTGGTGTGCGTCTTCTTGGCGCTCTGCCTGGATGTGGGAGCCGTGATGAGCCCGGCGTGGGTGACTGCCGACGACCAGTACTACCTGTCCCTGTGGGAGTCATGCTGGAAGCCGGCGAGCACCGAGAACTGGCAGTGCAGCAGCACGCTGGGTTCAGACTGGCAGGTTGCTACACTGGCCCTATTGCTAGGAGGTGGAGCCCTGGTGCTGATGTCATTCCTGGTCGCTCTAGTTGCAGTGTGCATCGGCACGAGACGGCGCTTCTACGCACCCGTCGCCTTTATGCTCTTTGCTGCAGTTGTCCTCCAGGCCTGCAGCTTGGTCCTCTACCCCATCAAGTTCATCGAGAGCATCAACCTGAGAATCTACCACGAGTTCAACTGGGGCTACGGCCTGGCCTGGGGAGGAACCATCTTCTCTTTCGGTGGGGGAATCCTCTACTGCCTCAACCCCAAAAACTACGAGGAGTATTACTAGCTCTAATGCAAGCCGAGAACCCTACATGTTGGTAGAGGTAGTCAGGAGACAagcaaggttgtttttttttgtaaccgCTCAATTCCCAAGAACTGTAAGTATAAAGTATACATCGTATTTGAACCAATAACTGTACTACCACAAGCTTCCACCCGGGGGAAATTCAAGGGGTGAAGCTGGCGGTTGGGGGATTTCTTTTCTTGCCTCAAATAACAGTTGAGGCTGCATATTTGAACTTACAGCCCTAACGGCACCAAGTTGGTCCTGGGGAGGGGTTGGTGGGTTGGGTGGTACCAGTTTAATCCCAGGACTTCTGACACAGGGTAGAACTGACAACCCTGTAGTAACAAAGGATGGAGGGTTATGGTGATGACCGCACCTCTGTTCTTTCTTCCCTGTGAACTAAACTGCAAGTCACTACTAACAACCCAACTTATTGACTCTTTTACTTTGGAATCAGGATATCACACTGGGAGGCTTTTACCACACGTTtacgcacgcatgcacatgCAAAGGCACGTGTATCTTCATCTGTCAACATTAAATCCTTTGGGCTGGGCTTCAGCAATCTACCCCTAGACTCCTACTCCATCAGTGCATCATTTTGGCAttatgtcaaagtttaagaGTCCTCTGGAGCTCTTAAACTTTCACAAGGACATGAAAGAGGATCAGACGCTACAGTTGCTGTTCATAACTTTTAATAAGACAGATAGATTCCTCATGGGCCGGAGGTAAGAGGGGGGAATAAAATAAAGACACCCGCTCAATATTCTGTTATCGACCCGTTTGTCTGTTACCGTGGCAACCCACAGGGTGTGCACATGCAGCTGTCATGATTGATTAGCAACAGTCGAAGGTGTGAGACGGGACTGCGCTTAGCAGCCTTCAAGGGTCTGCTAAATTTCGATTCCCAATGAGCCAAATTTTTCCGCACTGTGATTTTTGGAGAATCCTTCCTTCTTTGGTCCAGCTTATCTGCATCCTGTTTGTTGATGGGTCGCTATAAACATTACAGACAGTTACAGTCTCTCAGTGGGCATCCTTACATGAGCATGAATAATTTAGGTAAGTTAGGATCCGCATTCTGAATGTAATAATGTGATTATGCACTCAGCTGAGGAACGTAAAACCACAAAAACACCTAAGaactatgactttattagacACCCCTTGGGTCATGTACACCTTTGTCTTATTTCATAAACTTAAGTAGCCAGCTCAGGTGGAGGTGAAATGGAAGTGTGGCCTTTAGCCTTTAGCTTTTTTTGCATTATGTGTTGGTAAAAGAGATGCATAGGTGGCATCAGCAATATTTTAGTCAGAAATCACTTCATAATCTAAAAAAGGTACCTAACTGATGATAACAGAATAATTTAAAGGACATAATTAGACATTCACCTAACTCTCAGTATGAGGAATCAATGCATTATTGTGTATACATGACCACTGTAGCTAATTACTTTAAAACCAGATCAGTGTATCTACTGATAAAATAAGGCCATGTTTCATTAACATCAGACTGCTGTTTCCTTGTCTACAGTAAATGTCAGGGATCAGCCCTGAACCCAGTGCAGATTTTGGTGGGAAACAAGCCTGGCATGCATCTGTTGGCACAGGAAAGGCAAATGTCAATATCAGCCAGTGTCAAATGTCACTATTATATGTTATTATATGGTTGCTGGGACTTGTATAGACACATATAGAAAAAGTAAGACTGTATCATATACCAAAGCATCACAACCTTACAGAAAGAACATTCGATAATCACTGCTTTCAAGTATTTATCTCATTTCCCCTGTCCACAAGGTTTGGCTCTAATCATCAGTTGTTTGGATGGTAGCCATGAGTCCAGTGCAGTTTCTGGGTGTAAATATGGATGGGGAAGTAAATATTGTAACTTCTATGCAGATTGTATTAGGCGATAAGACAGGAAACAAGATACGTTTTGCCTTCATTGTGCAAAAACCTATTTATGTTTTCTCTCAGATGAACTATAAATTCCCCTTCACCTGTGTGCTGAATTACTTTCCTAACCCTGTGACCTCCATTCTCCCTTCAAAACCCATTCTGTAATTTTAAAAGTCCACGGTGAGTCGAATGTAAAATAAGAAATATTTAGATGATATTTTGGAGATACAAGCAGTGTCTTCTCTGTGCTCTCCATTGCCACCTATTTACCATGGAGCTGTCAAGTAACCATCACCCAAAAATAGAATCCAGGCTGGCCCCCTTGCCACCTTAACAAATGTAGAACTGTGCAGACTCCACATGATTCATGCAGCTGACAGAAgtccatttattttatataaagtGACACAAAGATGCTTGTCGATGAATTTTGCCTGTCACCACAACAGTATTGCTTCTAAAATCAGCTCATTGAAGTTTATTAATGACTGAGATCTGATGTGACTAAGATTTCAATAACGCATTAGATTACAGCCCACAAGTTACGGGTATCAATACAATAATGACTGCGTACCTATAACAAGATAAACATAAACAAGTGAAGAAGGCAAGAGGTTAGGGACTTAGGGAGTAACAACTTTGTGTTTGTACTTATCAttattaaaggtgccgtaggtaggattgtgaagatccaggacttggtCAAAAAacttgaacatcaacaacttctcagtccttccccccctttctgctaaagcccaaaa

Function


symbol description
tmem47 Predicted to be involved in cell-cell adhesion. Predicted to be located in adherens junction and membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Is expressed in gill; heart; integument; and pleuroperitoneal region. Orthologous to human TMEM47 (transmembrane protein 47).

NR:

description
PREDICTED: transmembrane protein 47-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU318413 False 250 lncRNA 0.61 1 13169418 13169667
XM_039793655.1 True 3498 mRNA 0.45 3 13169370 13202812

Neighbor


gene id symbol gene type direction distance location
LOC120554796 NA coding upstream 24152 13052363 ~ 13145218 (+)
LOC120554176 NA coding upstream 164567 12996051 ~ 13004803 (+)
wbp4 wbp4 coding upstream 177924 12986986 ~ 12991446 (+)
jagn1b jagn1,LOC103376239,LOC102797060 coding upstream 218010 12946562 ~ 12951360 (+)
LOC120554719 LOC104966735,LOC102306959,LOC103389234,LOC102212482 coding upstream 227981 12921143 ~ 12941389 (+)
dmd dmd,LOC101067548 coding downstream 13399 13216211 ~ 13686604 (+)
arl6ip6 NA coding downstream 1103157 14305969 ~ 14325821 (+)
cars2 cars2 coding downstream 1217197 14420009 ~ 14434616 (+)
LOC120554078 LOC105905688,LOC102213723,LOC102296852 coding downstream 1281356 14484168 ~ 14486243 (+)
atp1b1b LOC104936446,LOC103355854,LOC103389586 coding downstream 1296472 14499284 ~ 14508412 (+)
G234401 NA non-coding upstream 217394 12951582 ~ 12951976 (+)
G234372 NA non-coding upstream 284200 12884655 ~ 12885170 (+)
G234369 NA non-coding upstream 322825 12846189 ~ 12846545 (+)
LOC120554062 NA non-coding upstream 510893 12525903 ~ 12658477 (+)
G234482 NA non-coding downstream 103 13202915 ~ 13205979 (+)
G234561 NA non-coding downstream 522434 13725246 ~ 13725480 (+)
G234562 NA non-coding downstream 523266 13726078 ~ 13726690 (+)
G234571 NA non-coding downstream 543258 13746070 ~ 13749721 (+)
G234640 NA non-coding downstream 887976 14090788 ~ 14091270 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other upstream 143850 13002963 ~ 13025520 (+)
LOC120554049 ect2l other upstream 371716 12786641 ~ 12797654 (+)
LOC120554058 obsl1,LOC102777652 other upstream 800149 12358027 ~ 12369221 (+)
LOC120554357 NA other upstream 812193 12299632 ~ 12357177 (+)
LOC120554149 erbb4,LOC102292440,LOC101467929,LOC100701577 other upstream 1016930 11852389 ~ 12152440 (+)
G234651 NA other downstream 913047 14115859 ~ 14144870 (+)
LOC120554715 LOC103355859,LOC104964875 other downstream 1603715 14806527 ~ 14910075 (+)
LOC120554227 NA other downstream 1826026 15028838 ~ 15042444 (+)
LOC120554234 NA other downstream 3185885 16388697 ~ 16612671 (+)
trnat-cgu_20 NA other downstream 3553753 16756565 ~ 16756637 (+)

Expression



Co-expression Network