LOC120554079


Basic Information

Item Value
gene id LOC120554079
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14477426 ~ 14484029 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU318761
gcagaggaaaataaacagagactcacagccagccgaccccaaccatcacaGCTTTATCTTTTTTGGTAGAAGAAAAGCTTAATGTTGGACTACCCTCAATCGGCTCCTTGATGCAGAAGATATATCACCTTAGCATGTGCAGAGGTTCCAACAGGCAGCACTAGCATTTCTGGTTTGCTGAACTACTTCCATGCCAGAGACCCCAAGAGCATGATCAGCTCAGCGAGGAGTTCCTGAAATATCAATTGATGGACATCCCCAAGCCTCAACACCCAGCCACTTTCAACATTGTGGGTTTTGGGGGGAATATGTCATCAATGAAGACTAGGATGGCCACCCATCAAGAGCAAGGTTCTGTCCAAGGTTTCCTTGTCACTGTCACAAccaaatgcatgctcttgggggaatttttgggtctctg
>XR_005638309.1
GTAGAAGAAAAGCTTAATGTTGGACTACCCTCAATCGGCTCCTTGATGCAGAAGATATATCACCTTAGCATGTGCAGAGGTTCCAACAGGCAGCACTAGCATTTCTGGTTTGCTGAACTACTTCCATGCCAGAGACCCCAAGAGCATGATCAGCTCAGCGAGGAGTTCCTGAAATATCAATTGATGGACATCCCCAAGCCTCAACACCCAGCCACTTTCAACATTGTGGGTTTTGGGGGGAATATGTCATCAATGAAGACTAGGCAGATGGCCACCCATCAAGAGCAAGGTTCTGTCCAAGGTTTCCTTGTCACTGTCACAAccaaatgcatgctcttgggggaatttttg
>XR_005638310.1
GTAGAAGAAAAGCTTAATGTTGGACTACCCTCAATCGGCTCCTTGATGCAGAAGATATATCACCTTAGCATGTGCAGAGGTTCCAACAGGCAGCACTAGCATTTCTGGTTTGCTGAACTACTTCCATGCCAGAGACCCCAAGAGCATGATCAGCTCAGCGAGGAGTTCCTGAAATATCAATTGATGGACATCCCCAAGCCTCAACACCCAGCCACTTTCAACATTGTGGGTTTTGGGGGGAATATGTCATCAATGAAGACTAGGATGGCCACCCATCAAGAGCAAGGTTCTGTCCAAGGTTTCCTTGTCACTGTCACAAccaaatgcatgctcttgggggaatttttgggtctctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU318761 True 421 lncRNA 0.47 3 14477426 14484029
XR_005638309.1 False 351 lncRNA 0.47 3 14477434 14483964
XR_005638310.1 False 356 lncRNA 0.47 3 14477426 14483964

Neighbor

gene id symbol gene type direction distance location
LOC120554074 ddrgk1 coding downstream 31330 14434308 ~ 14446096 (-)
atg3 atg3 coding downstream 57435 14400865 ~ 14419991 (-)
slc19a2 slc19a2 coding downstream 78056 14356830 ~ 14399370 (-)
LOC120554388 NA coding downstream 177736 14290673 ~ 14299690 (-)
gtf3c3 gtf3c3 coding downstream 389944 14010265 ~ 14087482 (-)
LOC120554302 ube3a coding upstream 61711 14545740 ~ 14569910 (-)
LOC120554575 NA coding upstream 117126 14601155 ~ 14614899 (-)
chrm4a LOC104937647,LOC103355860,LOC100699420 coding upstream 394529 14878558 ~ 14924344 (-)
gucy1b2 LOC103355875 coding upstream 451691 14935720 ~ 14963971 (-)
trnar-ccg_4 NA coding upstream 478332 14962361 ~ 14962433 (-)
G234752 NA non-coding downstream 121026 14356095 ~ 14356400 (-)
G234736 NA non-coding downstream 180049 14297080 ~ 14297377 (-)
G234676 NA non-coding downstream 287188 14190031 ~ 14190238 (-)
G234675 NA non-coding downstream 288025 14189095 ~ 14189401 (-)
G234673 NA non-coding downstream 296401 14180705 ~ 14181025 (-)
G234802 NA non-coding upstream 53812 14537841 ~ 14542320 (-)
G234828 NA non-coding upstream 115107 14599136 ~ 14600286 (-)
G234896 LOC103355859,LOC104964875 non-coding upstream 322603 14806632 ~ 14828409 (-)
G234927 NA non-coding upstream 602921 15086950 ~ 15087401 (-)
LOC120554280 NA non-coding upstream 705729 15189758 ~ 15190653 (-)
arhgap1 arhgap1,LOC101474800,LOC102196105 other downstream 187383 14194312 ~ 14290043 (-)
G234405 NA other downstream 1523301 12953090 ~ 12954125 (-)
G234253 LOC103139183,LOC106940425,LOC106914874 other downstream 2184283 12278519 ~ 12293143 (-)
igfbp5a igfbp5,LOC103371819,LOC104928322,LOC101465019 other downstream 2939105 11524382 ~ 11538321 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other downstream 2987949 11458937 ~ 11489477 (-)
G234898 NA other upstream 363805 14847834 ~ 14849737 (-)
LOC120554377 LOC103355861 other upstream 482287 14966316 ~ 15013814 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other upstream 1764665 16248694 ~ 16288150 (-)
LOC120554218 NA other upstream 1842064 16326093 ~ 16352877 (-)
G235387 NA other upstream 2127954 16611983 ~ 16616316 (-)

Expression


Co-expression Network