LOC120554715 (LOC103355859,LOC104964875)


Basic Information

Item Value
gene id LOC120554715
gene name LOC103355859,LOC104964875
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14806527 ~ 14910075 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU318853
GAGACAAAAGCAGGGGGCTAGGGGAGGTGCATGAGTGAGACCTAaaacaagagagagacagaacttTCCCCCGAGTCTTTCTACAACAGCCAGGCAAACAAGATGAGGgctgcgctgctgctgctgctgttagttACTCTCATCACTGTCAAAACTGTAGCTGGAGGGAAAAACAAGAAAGAGAAAAACAAACCTTCCCAGTCCGGGTCAGAATGCACTGACTGGCGCTATGGCAACTGTGTCCCTAGCAACGGGGACTGTGGAGCAGGGTTTAGAGAGGGTTCATGTGACCAGCAGAACAAGAAGATGAAATGCAAAGTACCTTgcaactggaaaaaaaactttggagCTGACTGTAAGTATCGGTTTGGTAGTTGGGGAGAGTGTGATCCAACCTCTGGCTCGCGGACCAGAACAGGGACATTGAAGAAGGCTCTGTTTAATGCAGAGTGTCAACCAACTGTTTCTGCCTCCAAACCTTGCGCTGGAGAAACCAAGACAAAAACCAAAGgaaagaagagaaaaggcaAGGGCAACTAGAAACATACTGTTGAGAAGAGTCTCCAAGGACAGACAAGAGTCTAAGAAGAAACAGAAATGAAACAATAATTGTCTGAACGAGCTGTCCTCTGACACTTATAACCCGATTTCCATACACACAATTTTGAATACAGCCTTCTTCAACCATGACAAAAAcatcacttttatttttaaaaagaaaagtctaCATCTGGACTTACATTCAATTTGTAAATATGCACTAAACTCTAGATTAGGACTAATAAAGCGAGCATGACCTATGGCATTATAACCAGCCAACCCAGCTCCTTCCAAATCAAAGTGAATTTGGAATATTCATATTATAGGCATACATTTTTTAGACCACCATGTTAGAAATTCCTTTAACTTtgaaatattgtaaaaaaattattttagggAATTCTCTATATCTGACTGATCACTACCAAATCTTTACTATATTAAATACATCTGGGCATCCACTCCACCAAAGCTACCCTGAGAATGGGAGCTATTTTACCTCTAAAGTTGTCTCAGCTCATCTATGCTTTGGAATTGAATCATTTAGTTAAATAAATTGGACGTGTCACTAGTATCCACACACTAACTGTATACTTTGTGTTTCAGCTTATTCTGTCATAATAAACACAGCCAAGAATCTTATCCCTTTTAATAATTCTAACTACCATATCTACTTCTAGATGAAAGTGCATTTTGAATATCAGCTTTATAAATCTGCCTTAGGATCACAAACCCCCTGTTACATTACATAGATTTCTTTCTCTTTgaatattatatacatatttcCCTTTTTCACCCTCTTTAGAATGGCCACTTTTCTCCCATAGGTTTGATGCTACAGTATTATAcaatatttcttttgtttattaaatTTTCAAAACATACTGTGACACTgtcaaaaaaaaaaaa
>TU318854
GAGACAAAAGCAGGGGGCTAGGGGAGGTGCATGAGTGAGACCTAaaacaagagagagacagaacttTCCCCCGAGTCTTTCTACAACAGCCAGGCAAACAAGATGAGGgctgcgctgctgctgctgctgttagttACTCTCATCACTGTCAAAACTGTAGCTGGAGGGAAAAACAAGAAAGAGAAAAACAAACCTTCCCAGTCCGGGTCAGAATGCACTGACTGGCGCTATGGCAACTGTGTCCCTAGCAACGGGGACTGTGGAGCAGGGTTTAGAGAGGGTTCATGTGACCAGCAGAACAAGAAGATGAAATGCAAAGTACCTTgcaactggaaaaaaaactttggagCTGACTGTAAGTATCGGTTTGGTAGTTGGGGAGAGTGTGATCCAACCTCTGGCTCGCGGACCAGAACAGGGACATTGAAGAAGGCTCTGTTTAATGCAGAGTGTCAACCAACTGTTTCTGCCTCCAAACCTTGCGCTGGAGAAACCAAGACAAAAACCAAAGgaaagaagagaaaaggcaAGGGCAACTAGAAACATACTGTTGAGAAGAGTCTCCAAGGACAGACAAGAGTCTAAGAAGAAACAGAAATGAAACAATAATTGTCTGAACGAGCTGTCCTCTGACACTTATAACCCGATTTCCATACACACAATTTTGAATACAGCCTTCTTCAACCATGACAAAAAcatcacttttatttttaaaaagaaaagtctaCATCTGGACTTACATTCAATTTGTAAATATGCACTAAACTCTAGATTAGGACTAATAAAGCGAGCATGACCTATGGCATTATAACCAGCCAACCCAGCTCCTTCCAAATCAAAGTGAATTTGGAATATTCATATTATAGGCATACATTTTTTAGACCACCATGTTAGAAATTCCTTTAACTTtgaaatattgtaaaaaaattattttagggAATTCTCTATATCTGACTGATCACTACCAAATCTTTACTATATTAAATACATCTGGGCATCCACTCCACCAAAGCTACCCTGAGAATGGGAGCTATTTTACCTCTAAAGTTGTCTCAGCTCATCTATGCTTTGGAATTGAATCATTTAGTTAAATAAATTGGACGTGTCACTAGTATCCACACACTAACTGTATACTTTGTGTTTCAGCTTATTCTGTCATAATAAACACAGCCAAGAATCTTATCCCTTTTAATAATTCTAACTACCATATCTACTTCTAGATGAAAGTGCATTTTGAATATCAGCTTTATAAATCTGCCTTAGGATCACAAACCCCCTGTTACATTACATAGATTTCTTTCTCTTTgaatattatatacatatttcCCTTTTTCACCCTCTTTAGAATGGCCACTTTTCTCCCATAGGTTTGATGCTACAGTATTATAcaatatttcttttgtttattaaatTTTCAAAACataaaaaaaaaaaa
>XM_039793718.1
AGTATGAACTGGTTTGTGAGACAAAAGCAGGGGGCTAGGGGAGGTGCATGAGTGAGACCTAaaacaagagagagacagaacttTCCCCCGAGTCTTTCTACAACAGCCAGGCAAACAAGATGAGGgctgcgctgctgctgctgctgttagttACTCTCATCACTGTCAAAACTGTAGCTGGAGGGAAAAACAAGAAAGAGAAAAACAAACCTTCCCAGTCCGGGTCAGAATGCACTGACTGGCGCTATGGCAACTGTGTCCCTAGCAACGGGGACTGTGGAGCAGGGTTTAGAGAGGGTTCATGTGACCAGCAGAACAAGAAGATGAAATGCAAAGTACCTTgcaactggaaaaaaaactttggagCTGACTGTAAGTATCGGTTTGGTAGTTGGGGAGAGTGTGATCCAACCTCTGGCTCGCGGACCAGAACAGGGACATTGAAGAAGGCTCTGTTTAATGCAGAGTGTCAACCAACTGTTTCTGCCTCCAAACCTTGCGCTGGAGAAACCAAGACAAAAACCAAAGgaaagaagagaaaaggcaAGGGCAACTAGAAACATACTGTTGAGAAGAGTCTCCAAGGACAGACAAGAGTCTAAGAAGAAACAGAAATGAAACAATAATTGTCTGAACGAGCTGTCCTCTGACACTTATAACCCGATTTCCATACACACAATTTTGAATACAGCCTTCTTCAACCATGACAAAAAcatcacttttatttttaaaaagaaaagtctaCATCTGGACTTACATTCAATTTGTAAATATGCACTAAACTCTAGATTAGGACTAATAAAGCGAGCATGACCTATGGCATTATAACCAGCCAACCCAGCTCCTTCCAAATCAAAGTGAATTTGGAATATTCATATTATAGGCATACATTTTTTAGACCACCATGTTAGAAATTCCTTTAACTTtgaaatattgtaaaaaaattattttagggAATTCTCTATATCTGACTGATCACTACCAAATCTTTACTATATTAAATACATCTGGGCATCCACTCCACCAAAGCTACCCTGAGAATGGGAGCTATTTTACCTCTAAAGTTGTCTCAGCTCATCTATGCTTTGGAATTGAATCATTTAGTTAAATAAATTGGACGTGTCACTAGTATCCACACACTAA

Function

NR:

description
PREDICTED: midkine-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU318853 True 1449 TUCP 0.39 6 14806544 14838091
TU318854 False 1435 TUCP 0.38 6 14806544 14910075
XM_039793718.1 False 1143 mRNA 0.41 5 14806527 14828105

Neighbor

gene id symbol gene type direction distance location
LOC120554076 NA coding upstream 12062 14651142 ~ 14794465 (+)
cryaa cryaa,LOC104954342 coding upstream 161032 14641713 ~ 14645495 (+)
LOC120554576 hsf2bp coding upstream 169708 14615057 ~ 14636819 (+)
ccdc14 NA coding upstream 207589 14589062 ~ 14598938 (+)
ddx4 NA coding upstream 219784 14571126 ~ 14586743 (+)
LOC120554245 NA coding downstream 151049 15061124 ~ 15070384 (+)
LOC120553992 hps3 coding downstream 374427 15284502 ~ 15285185 (+)
LOC120553993 NA coding downstream 424165 15334240 ~ 15372849 (+)
LOC120554259 NA coding downstream 540196 15450271 ~ 15456137 (+)
LOC120554262 NA coding downstream 546482 15456557 ~ 15458660 (+)
G234841 NA non-coding upstream 157478 14648124 ~ 14649049 (+)
G234838 NA non-coding upstream 160308 14645602 ~ 14646219 (+)
G234777 NA non-coding upstream 332844 14473448 ~ 14473683 (+)
LOC120554077 NA non-coding upstream 344776 14448891 ~ 14461751 (+)
G234763 NA non-coding upstream 360265 14438958 ~ 14446262 (+)
G234895 NA non-coding downstream 93554 15003629 ~ 15013712 (+)
G234908 NA non-coding downstream 110157 15020232 ~ 15020564 (+)
G234909 NA non-coding downstream 113364 15023439 ~ 15023739 (+)
G234919 NA non-coding downstream 135149 15045224 ~ 15045520 (+)
LOC120554269 NA non-coding downstream 287924 15197999 ~ 15200741 (+)
G234651 NA other upstream 661657 14115859 ~ 14144870 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other upstream 1603715 13169370 ~ 13202812 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other upstream 1781007 13002963 ~ 13025520 (+)
LOC120554049 ect2l other upstream 2008873 12786641 ~ 12797654 (+)
LOC120554058 obsl1,LOC102777652 other upstream 2437306 12358027 ~ 12369221 (+)
LOC120554227 NA other downstream 118763 15028838 ~ 15042444 (+)
LOC120554234 NA other downstream 1478622 16388697 ~ 16612671 (+)
trnat-cgu_20 NA other downstream 1846490 16756565 ~ 16756637 (+)
trnat-ugu_43 NA other downstream 1850283 16760358 ~ 16760430 (+)
trnat-agu_56 NA other downstream 1851424 16761499 ~ 16761572 (+)

Expression


Co-expression Network