LOC120554227


Basic Information

Item Value
gene id LOC120554227
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15028838 ~ 15042444 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU318915
cAATTGGATTATGAAGTTAATGTTTGGGTGATTAATAACTCAGCCTTGTTCTTGTAGCGTTTGGAGTAAATATCCTTTAGGCAGGGGAGGGTACAATCTATTGTATGTTTACCTATAATCATGCTTTGCAGGGCCTTACCGTACTGTTCTGTGCTGTTTCTGTACCAAGCATGATGAGGTGAAGCTCTTGATGATGTAGGATTAGAAATTCCTCAGTATTTGAGGGGATATCTGGAAGTTCCTCAGGTGTCTGAAACAGTCTCTGCCTTGCCTTTCTCACCACTTAGTCAGTGAACAtgaaccaaccaaccaacatgAACTTTTAAGTttcaatatgtaatactgacagctagcatTTAATATggttactgcagtccaaattcaaaatactggagagtcatCTACCCCGTTCCCTCCTCCCCAGCGTcaaagttcacgggggttgtcAGGTTGCGGACGTTAAACCCAATGTCCCACAATGTCAATGTtagctagatgctagtctcgcattgccagacattactccacagggCAGCGGAGTTGCTAGATGCTGCTATGTTGACAGTTATAAAAGCCGGTGATCTTGCGGAAATCTGTACCCCGGCCGCAAGTTACATTTTATTGGCCAAACGTAACAACAATGGCCGTGACCTTGCAGAGCTTTGTGCCCGACTGACAGCCACCCTTTTTCCGCTTAACGTCACTGCAACAGCCGGTAAAAAGAC
>XM_039792984.1
aGTTCATATGTTACCGACCCAGAGCAGTCAGCGCAGAGAAGCCGTACACAGAAATAAAGGCAGAATATCCAAtgctttagtttagtttagttaatCAGAGATGGACCGGCGCCGGAAACAGCTGGTGGGGGTTTTAAAAACTGAAACGGAACTGCGAGGAGAAGCTTTACCTTCAGATGTCCAGAAAGTGATTGTTGGTGAAGAGCAGGAGTGGAGCTCATGTTTGGACCAGGAGGACACAAagcccccacacattaaagaggaacaggggGAAGTCTGGACCAGTCAGGagagggaggggctggaggatgctgatatcaccaagtttcCATTTACTCTTGTCCCTGTAAAGAATGAATATGATGAAGAAAAACCTAATTCCTCACAACTTCATGAAAGACAACCGGAACAGAtgaaaacagaagctgatggagaggactgtggaggaccagcaCCAGTCAGACGCTCTGATCCAGACAGACATTTACAGCCAGACACTGACAAGACTgtagactcttctgaacctgagactgatagGAGTggtgattggaaggagaccaaaAAAATTCAGTCAgatttaaactctctgaatagTGATCAAATATGTAGTACTGGCGAtaaaccatttagctgctctgGGTGTGGAAAAAGATTTGGCACCTATAAACACttgaagagacacatgatatctcatacaggagagaaaccatttagctgctccaTCTGTATGAAATATTTTGCATTGAGACAACGTTTACAggcacacatgagaatccacacaggagagaaaccatttagctgccccacctgtaagaaagcttttacagAGAGCGGAAGTTTaaagaaacacatgagaatccacacaggagagaaaccattcAGCTGCTCCgtctgtaagaaagcttttacagAGAGTGGAAATTTGTATAAACACATGAGAACCCATAACCGCAAGCCAATTCTGAAGAAATGCATGAGACGccacactggagagaaaccatttaactgttcagtctgtaagaaagcttttacaCTAGGTGAAAActtacagaaacacatgagaacccacacaggggagaaaccatttagctgttcaatctgtaagaaagctttttCCGCGAGCGGAAGTTTACATAGACACATGaaaatccacacaggagagagaccaTTCAGCTGTTCTgtctgtaagaaagctttttCGGTGAGTGGGAATTTACATAAACACATGAGaacccacacaggagagaaaccatttagctgctcagtctgtaagaaagcttttacagAGAATGGAAGTTTACataaacacatgagaatccacacaggagagaaaccattcAGCTGCTCCATCTGTAAGAAAGCTTTCACTGTGAGTGGAAGTTTACAGACGCACATAAGaacccacacaggagagaagtcttttagctgctcagtttgtaagaaaTCGTTTATACTGAGTGGAAATTTACATAAGCACATGAGaacccacacaggagaaaaaccatTTAACTGCTTagtctgtaagaaagcttttacagAGAGTGGAAACTTACATAAACACATGAGAACCCACACATGATAGAAACCATTTAGACGTGTGGAGTAGAGCTTCAGTCAAGAAGGGAGAGCAGAGCTCCTCAGGTGTAAAaactttttaatttaaagttaatgaggtCTCTAAAAGTGATATTAGATCTAATACTCTGttggtcttttaaaaaaaagtcaaatctaAAATCCAATAATCttattttagaaatgattttgacagtgtttaaaaatcAATTGGATTATGAAGTTAATGTTTGGGTGATTAATAACTCAGCCTTGTTCTTGTAGCGTTTGGAGTAAATATCCTTTAGGCAGGGGAGGGTACAATCTATTGTATGTTTACCTATAATCATGCTTTGCAGGGCCTTACCGTACTGTTCTGTGCTGTTTCTGTACCAAGCATGATGAGGTGAAGCTCTTGATGATGTAGGATTAGAAATTCCTCAGTATTTGAGGGGATATCTGGAAGTTCCTCAGGTGTCTGAAACAGTCTCTGCCTTGCCTTTCTCACCACTTAGTCAGTGAACAtgaaccaaccaaccaacatgAACTTTTAAGTttcaatatgtaatactgacagctagcatTTAATATggttactgcagtccaaattcaaaatactggagagtcatCTACCCCGTTCCCTCCTCCCCAGCGTcaaagttcacgggggttgtcAGGTTGCGGACGTTAAACCCAATGTCCCACAATGTCAATGTtagctagatgctagtctcgcattgccagacattactccacagggCAGCGGAGTTGCTAGATGCTGCTATGTTGACAGTTATAAAAGCCGGTGATCTTGCGGAAATCTGTACCCCGGCCGCAAGTTACATTTTATTGGCCAAACGTAACAACAATGGCCGTGACCTTGCAGAGCTTTGTGCCCGACTGACAGCCACCCTTTTTCCGCTTAACGTCACTGCAACAGCCGGTAAAAAGACCCCGACCTCGCAGTCGTCGCTGTttgtcggctacggccgctgaacagaAGCAGGGAAAGAATTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU318915 False 725 lncRNA 0.45 1 15041654 15042378
XM_039792984.1 True 2573 mRNA 0.43 2 15028838 15042444

Neighbor

gene id symbol gene type direction distance location
LOC120554076 NA coding upstream 234373 14651142 ~ 14794465 (+)
cryaa cryaa,LOC104954342 coding upstream 383343 14641713 ~ 14645495 (+)
LOC120554576 hsf2bp coding upstream 392019 14615057 ~ 14636819 (+)
ccdc14 NA coding upstream 429900 14589062 ~ 14598938 (+)
ddx4 NA coding upstream 442095 14571126 ~ 14586743 (+)
LOC120554245 NA coding downstream 18680 15061124 ~ 15070384 (+)
LOC120553992 hps3 coding downstream 242058 15284502 ~ 15285185 (+)
LOC120553993 NA coding downstream 291796 15334240 ~ 15372849 (+)
LOC120554259 NA coding downstream 407827 15450271 ~ 15456137 (+)
LOC120554262 NA coding downstream 414113 15456557 ~ 15458660 (+)
G234909 NA non-coding upstream 5099 15023439 ~ 15023739 (+)
G234908 NA non-coding upstream 8274 15020232 ~ 15020564 (+)
G234895 NA non-coding upstream 15126 15003629 ~ 15013712 (+)
G234869 NA non-coding upstream 141225 14866305 ~ 14887613 (+)
G234841 NA non-coding upstream 379789 14648124 ~ 14649049 (+)
G234919 NA non-coding downstream 2780 15045224 ~ 15045520 (+)
LOC120554269 NA non-coding downstream 155555 15197999 ~ 15200741 (+)
LOC120554271 NA non-coding downstream 426370 15468814 ~ 15474007 (+)
LOC120554283 NA non-coding downstream 521306 15563750 ~ 15566563 (+)
G235056 NA non-coding downstream 571772 15614216 ~ 15614553 (+)
LOC120554715 LOC103355859,LOC104964875 other upstream 118763 14806527 ~ 14910075 (+)
G234651 NA other upstream 883968 14115859 ~ 14144870 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other upstream 1826026 13169370 ~ 13202812 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other upstream 2003318 13002963 ~ 13025520 (+)
LOC120554049 ect2l other upstream 2231184 12786641 ~ 12797654 (+)
LOC120554234 NA other downstream 1346253 16388697 ~ 16612671 (+)
trnat-cgu_20 NA other downstream 1714121 16756565 ~ 16756637 (+)
trnat-ugu_43 NA other downstream 1717914 16760358 ~ 16760430 (+)
trnat-agu_56 NA other downstream 1719055 16761499 ~ 16761572 (+)
trnat-cgu_21 NA other downstream 1720092 16762536 ~ 16762608 (+)

Expression


Co-expression Network