LOC120554276


Basic Information

Item Value
gene id LOC120554276
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16125461 ~ 16126791 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU319242
TGGAGACGTGTCTGGGCTGGCGTGCTGCATGCTTTTTGCCACTGCCAGAGGTTGTCAGTTGCTGCATCCTTCGTGCctttcattgtttgtatttccGTGCGGGTGGCATTAACGAGCGTTTGTTTCGGCCGTGGACGTCCCTGTGTGGCCACATGAACACCTGGGCTGCTGGCGTTGTGTGCCTCGTTGGGTGCTGTGTGGTTGCACGGATTGCGTGCACCCCTGCTGGGGTCTGAGGGCGGCGTGTCCTGTAAAGCGCTGCAAAGAGCTACAGCCTTGTGCATGCTGTTGTGGAGGCTGCCGGGGGCCACAGTTATCTAAGCGGCCAACACTCCCCGGCGCATTTCTCCTCCCACTCTTGCTGTTCTGGATATCGGCACAGGCTGTTCTGGATACTGGTACAAAAAGTGTCTGGAATTATGGGACTGTTCTGGGCGCATAGAGCTGGTTTGGATTGATACGGCTAAGCGTTTGAACACCCAGACATTGACTTTGTAAATATTGGTATTAACCTTGTATATATTGCATGTGGGTTTTTGTCCTTCTTTTCCTTGTGTTgattttggtttattttgttccttttaattatgcatgctggtttgttgttttgaattgttttgtttattactTTTCCAATATTCATTGTATGCTTTCTTCTAACCTAAAAGATTCtactattttaataaataacatttgaaacatactaaaataaaattgtatattttctTATAAGTATATTATTGTCTCTGACCCCTAATTTTGGATAAACGGATCTGTGTGCTTTGAAGGTCTTGGGCCTATCCCAAGTGGCGTTGTCGGAAATCTTAA
>XR_005638350.1
aacgggttattggctgcatgtaaacgtagtctgtgatacataacctgttaataaggacatatttatCATATCTAGTAAAGAAGTGTTAACCACGAGTaacgcttctttaagtagcctcgttgggatggggtctaagagatgggtagatggcttagctgaagacaCCTTaatattaattgttgaaggtctataggattaAAGCAGTTGTGACAGGATGAGGTTTGCCCCTCCCTCTTACCTGTGCATGGAAGTGCGCACCAGCACACCTGGGGCTCATCCCCTTTGATTGGGAGCAGGTGGGGGCTCTATTTAAGCCTGTGTGTAGActtgttctttttctgtcttctcCTGTTGGGTGTGGAGACGTGTCTGGGCTGGCGTGCTGCATGCTTTTTGCCACTGCCAGAGGTTGTCAGTTGCTGCATCCTTCGTGCctttcattgtttgtatttccGTGCGGGTGGCATTAACGAGCGTTTGTTTCGGCCGTGGACGTCCCTGTGTGGCCACATGAACACCTGGGCTGCTGGCGTTGTGTGCCTCGTTGGGTGCTGTGTGGTTGCACGGATTGCGTGCACCCCTGCTGGGGTCTGAGGGCGGCGTGTCCTGTAAAGCGCTGCAAAGAGCTACAGCCTTGTGCATGCTGTTGTGGAGGCTGCCGGGGGCCACAGTTATCTAAGCGGCCAACACTCCCCGGCGCATTTCTCCTCCCACTCTTGCTGTTCTGGATATCGGCACAGGCTGTTCTGGATACTGGTACAAAAAGTGTCTGGAATTATGGGACTGTTCTGGGCGCATAGAGCTGGTTTGGATTGATACGGCTAAGCGTTTGAACACCCAGACATTGACTTTGTAAATATTGGTATTAACCTTGTATATATTGCATGTGGGTTTTTGTCCTTCTTTTCCTTGTGTTgattttggtttattttgttccttttaattatgcatgctggtttgttgttttgaattgttttgtttattactTTTCCAATATTCATTGTATGCTTTCTTCTAACCTAAAAGATTCtactat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU319242 False 828 lncRNA 0.45 3 16125819 16126791
XR_005638350.1 True 1036 lncRNA 0.47 3 16125461 16126641

Neighbor

gene id symbol gene type direction distance location
LOC120554250 NA coding upstream 4453 16101835 ~ 16121008 (+)
LOC120554201 LOC103352956 coding upstream 24949 16084409 ~ 16100512 (+)
trnak-cuu_33 NA coding upstream 58145 16067244 ~ 16067316 (+)
trnat-agu_38 NA coding upstream 58835 16066553 ~ 16066626 (+)
trnak-cuu_32 NA coding upstream 59151 16066240 ~ 16066310 (+)
LOC120554230 NA coding downstream 13328 16140119 ~ 16152873 (+)
trnat-agu_39 NA coding downstream 36091 16162882 ~ 16162955 (+)
trnat-cgu_14 NA coding downstream 39758 16166549 ~ 16166621 (+)
LOC120554217 NA coding downstream 44256 16171047 ~ 16176028 (+)
LOC120553997 NA coding downstream 57049 16183840 ~ 16194852 (+)
G235152 NA non-coding upstream 241451 15883763 ~ 15884010 (+)
LOC120554272 NA non-coding upstream 441971 15676977 ~ 15683490 (+)
G235074 NA non-coding upstream 458105 15666872 ~ 15667356 (+)
G235056 NA non-coding upstream 510908 15614216 ~ 15614553 (+)
LOC120554283 NA non-coding upstream 558898 15563750 ~ 15566563 (+)
G235185 NA non-coding downstream 68771 16195562 ~ 16195700 (+)
G235216 NA non-coding downstream 94629 16221420 ~ 16222735 (+)
G235243 NA non-coding downstream 196050 16322841 ~ 16324248 (+)
trnat-agu_42 NA non-coding downstream 379830 16506621 ~ 16506694 (+)
trnak-cuu_34 NA non-coding downstream 380778 16507569 ~ 16507641 (+)
LOC120554227 NA other upstream 1083017 15028838 ~ 15042444 (+)
LOC120554715 LOC103355859,LOC104964875 other upstream 1215386 14806527 ~ 14910075 (+)
G234651 NA other upstream 1980591 14115859 ~ 14144870 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other upstream 2922649 13169370 ~ 13202812 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other upstream 3099941 13002963 ~ 13025520 (+)
LOC120554234 NA other downstream 261906 16388697 ~ 16612671 (+)
trnat-cgu_20 NA other downstream 629774 16756565 ~ 16756637 (+)
trnat-ugu_43 NA other downstream 633567 16760358 ~ 16760430 (+)
trnat-agu_56 NA other downstream 634708 16761499 ~ 16761572 (+)
trnat-cgu_21 NA other downstream 635745 16762536 ~ 16762608 (+)

Expression


Co-expression Network