LOC120554243


Basic Information

Item Value
gene id LOC120554243
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16880639 ~ 16932606 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU319439
aataaataaataaataaataaacccACAAATGTTGAACAGGTGGTTGCCAAAAGGGGAAACCAGAGTCCACAAGACTGTTGCCAATTGACTCAAGGGTAACCTTTACAATCCAGCCCTGACATTTAAATGCGCTTTGCCGTTAAATACATGCTTTATTTGAATCCAGTATGTCCAAATCTTAATGCTGAATAAACGACTTCCTCTTGTGTGCACTTCCCTTTTTGAAAGTCTTCACATGTATTGATTTCTGTATCCTGTGGTAGTGTCTCCCTTTGATATCTGTGTCCCACTTCCTCTGCCACGAATCAACACTGTGCGCGCAGCAGGTCTCCTAACTCGTGTTGAATTAAA
>XM_039793017.1
gacagaagaagaagaagaacactaCCGGAATtctacaagaagaagaagacgactACCGTTCATATGTCACCGACCTAAACACCGGAGCAGTCAGCGGAGAGGAGACGTTAGCCGGGTCCAAACAACGGCAGAAACCTCCCCCGAGCAGTATTAGTCTGCTGCTCAGACATGGACCGACACCGGAAACAGCTGGAGGAGGTTTTAAAACCGGAGACGAAGCCGCGAGGAgaagctTTACCTTCAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGACCCAAAGCCCCCCCACattaaagaagaacaggaggaACTTCGGATCAGTCAGGACgaagagcagcttcaagggccggaggaggctgatatcaccaagttcccattcactcctgtccctgtgaagagtgaggATGATGAAGATAAACATCAGTTCTCACAGCGTACTCGGAGGCAAACTGAAcagatggaaacagaagctgatggagaggactctgaaggaccagaaccagccatgAACTCCGATCCAGATACACATTCACAACCAGATACTGATGACGAgcctggagactcttctgaacctgagattGATACCAGTGCTGATTGGAAAGAGACCGGAGAACCTCCGTCAGGTTTGAACGCTATGAATAATGATGAAGTCCTTGTCAGTGATTCAAGATGTACTACTGGTGAGAAAGAGCATGAGAAAAGATTTGGCACCAGTGGACATGGAAAGAGACCATTTAGCTGCTCCgtctgtaagaaagcttttaaACAGAGTGgacatttacagaaacacatgagaacccacacaggagagaagccatttagctgctcagtctgtgaGAAAGCGTTTACACTGAGCGAATATTTACAggcacacatgagaatccacacaggagaaaagcaGTTTAGCTGCTCGgtctgtaagaaagcttttacagTGAGTGGAAATTTACGGGcccacatgagaatccacacaggcgAGAAACCGTTTAGCTGCGCATTCTGTGAGAAGGCTTTCACAGAGAGTGGGCATTTACAggcacacatgagaatccacaccggagagaaaccatttagctgctccgTCTGTCAGAAATCTTTTAGAGTGAGTGGAAGTTTACGGATACACATGAgggtccacacaggagagagaccaTTTAGCTGCTCCATCTGTATGAAATCTTTTACAGTGAGTGGAAGcttacagaaacacatgagaacacacacaggagagagaccatttagctgctcacTCTGTAAGAAAGCTTTCACAGAGAGAGGACATTTACAGCAACACATGAGAACCCACATAAGAGATACCATTTAGCTGTGTGAAGTGGAGCTCTAGTCTGGAAGGAGAGCATAGAACCTCAGTCAGGTTTAAACACtctaaaaatgaatgaaatttcTTAAGGTTATATGACATGTAATACTCTGTGGGtcctttttaaaagtctgaaaTCCGATAATTAGAATTGTAggctttaaaatgtcttaagTATGATTTTGAtaggtcaaaaaaaaaaaaatgtattggacTATGAAGTTAATGTAACTGTTGATATCCATGGAATGCCAAAGATTACCTTGTTCATTTTTGCAACAAACAGCTAATCCATGCAACCCCAGCCCTCTTCAAAATTGCAGTCCCAACTCAGTCTCCCTTACGTGTGAAGTGCTGTGACAACACCATCTCTATAAAAGCAACAACTGCTATTAGTCTTGGCTCCATCTCTACTCCAGAAGGAGAATAAACAACTTCATTGCATCTCTTAGCAGGGGTCCAGATCATCTCTACTGAAAGTAGCCCAACACAGAAACTCTTCTCTAGCAGATGATGCGAGTGCCTGCTTGGCGTAAACCAGTTAGCATCCCCAACATGGACAACATCTACCAGCTAACCTGAAGAAAGATTGGGATGCAGCCCAACATTGACTGCGTCATTTGACCTCCAAGTCTGGCTTTCACcggaccaagctcaatcttctAAGATTAAACATTAGTCTggggggagtctgctctgtattttctactgcacaagatcAACGGGAATAGTTCAAATGATTCTGTACGCagttggatagtccttcaaccaatcacaccaacgatccgggtgacgttaacggcgacagcggcatcaacgtgCGGCTGCGCTTCGGTGCCCGCCGtgctgaatgtaaacaaaaaagctgcttggtcgcttctccaTCGTCATTGTGGTAAACCCGCCAATAATAGCGCagcaggtggataagccagtttgtgattggtcccccgCAGATTAGTaatggaagcaggatagataattGTACATGTTTCCAGTCTGAGCACCAGGGTGAAATCAAATCACTGGcggatcgggctgggtttacccggTCTATTCACCCAGCCCGGCTTCCCCACAATGATGGAGCTGCCAGCGAACAGAGGAGTTCTTTCTGTGGTAATGGGACCAACTGGGCTAGCAGTAGAATAGCAACAGCGGCTAAGCAAAGCTGTCAACTGTTTACCTTCTGTTAATGTACAtgtattgatttgatttaatgcCATccaggcctactgtatattgtttgtttgttttagtcaAGTTATTGGGTAGCCAAACTGCTAAGTTGTTAGTTTAGGCTTCACACCGACACTCTTGCACCTCCTCTTTGTGTCTCTCACACAAGTACtccttgtgtgtctgtttttaattCTATTTTACAACTGTCAGCTGGTCGAAATGGCAGCGTCGGAGGCTCAACGGGCGCCCACAGGCCCGCGGCAACGGTACGTGGACGAGCGGGGTAGTGCACTAGCTACTGAAGAGAGCCAAGTggcattaaaacaaagcagagaaTCAAAGATTCTGCAACTGTATCGAGCATCTCATTATCACCAGCCATATCcccattcatatttagacgcaacaaatgCTATATATCCATCTACAAAATAACCGGAAAAGTCAAACgttagacagaagtacaaagagttaATAGCTTTATCAATAATTGTTGATCATTTGGCAGAATAAATTATCTTTGTTGGAGAAACGCTCAATCTTGTGTCAAATTTCACTATGGTTCTTGGGTTATACTGTATGCAAGCCAAACTACACAGCGAAATGACACTGATTAAACCAATCTACAGTGCAGTCACAGTAATTAGTGTAATTAAAtggcattctttggacaactTGTATAGAGAGAGGAATTAGAGTATGCTATTACTTTATCACACCTTTACATGAGCAGACAGACGGCATTTAAGTCATTGCTTACAGAAGAACTCATCAGGAGCAAAGTCTGGCCTAAGTAAATTCCCCCCCCATACAGCTTTGATGCGTCTAAAAGCCAACATTACAGTCGTCACTTTTGTTgaacagagtagaaatggaagaagaggatatgtcCCCCCGTCTTAAaatcctagtgacgtccctgTGTACAACTAAAACCAGACGCACACATCCTTTTCGTCCTTTAGCTTAGATCTTTTagttaagatgttttttttaatttattttttactttttcttttattcattttgggAATAAATGTTCTGGAATATACATGTTGTCTATGTAACTTAGAACAAAAGGGAATTCTGCCTAACAAGtactctgaagaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatataaaaacccACAAATGTTGAACAGGTGGTTGCCAAAAGGGGAAACCAGAGTCCACAAGACTGTTGCCAATTGACTCAAGGGTAACCTTTACAATCCAGCCCTGACATTTAAATGCGCTTTGCCGTTAAATACATGCTTTATTTGAATCCAGTATGTCCAAATCTTAATGCTGAATAAACGACTTCCTCTTGTGTGCACTTCCCTTTTTGAAAGTCTTCACATGTATTGATTTCTGTATCCTGTGGTAGTGTCTCCCTTTGATATCTGTGTCCCACTTCCTCTGCCACGAATCAACACTGTGCGCGCAGCAGGTCTCCTAACTCGTGTTGAATTAAACTTATTGCATTTCCAAAGTTAA
>XM_039793018.1
ggacagaagaagaagaagaacactaCCGGAATtctacaagaagaagaagacgactACCGTTCATATGTCACCGACCTAAACACCGGAGCAGTCAGCGGAGAGGAGACGTTAGCCGGGTCCAAACAACGGCAGAAACCTCCCCCGAGCAGTATTAGTCTGCTGCTCAGACATGGACCGACACCGGAAACAGCTGGAGGAGGTTTTAAAACCGGAGACGAAGCCGCGAGGAgaagctTTACCTTCAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGACCCAAAGCCCCCCCACattaaagaagaacaggaggaACTTCGGATCAGTCAGGACgaagagcagcttcaagggccggaggaggctgatatcaccaagttcccattcactcctgtccctgtgaagagtgaggATGATGAAGATAAACATCAGTTCTCACAGCGTACTCGGAGGCAAACTGAAcagatggaaacagaagctgatggagaggactctgaaggaccagaaccagccatgAACTCCGATCCAGATACACATTCACAACCAGATACTGATGACGAgcctggagactcttctgaacctgagattGATACCAGTGCTGATTGGAAAGAGACCGGAGAACCTCCGTCAGCAGGGGTCCAGATCATCTCTACTGAAAGTAGCCCAACACAGAAACTCTTCTCTAGCAGATGATGCGAGTGCCTGCTTGGCGTAAACCAGTTAGCATCCCCAACATGGACAACATCTACCAGCTAACCTGAAGAAAGATTGGGATGCAGCCCAACATTGACTGCGTCATTTGACCTCCAAGTCTGGCTTTCACcggaccaagctcaatcttctAAGATTAAACATTAGTCTggggggagtctgctctgtattttctactgcacaagatcAACGGGAATAGTTCAAATGATTCTGTACGCagttggatagtccttcaaccaatcacaccaacgatccgggtgacgttaacggcgacagcggcatcaacgtgCGGCTGCGCTTCGGTGCCCGCCGtgctgaatgtaaacaaaaaagctgcttggtcgcttctccaTCGTCATTGTGGTAAACCCGCCAATAATAGCGCagcaggtggataagccagtttgtgattggtcccccgCAGATTAGTaatggaagcaggatagataattGTACATGTTTCCAGTCTGAGCACCAGGGTGAAATCAAATCACTGGcggatcgggctgggtttacccggTCTATTCACCCAGCCCGGCTTCCCCACAATGATGGAGCTGCCAGCGAACAGAGGAGTTCTTTCTGTGGTAATGGGACCAACTGGGCTAGCAGTAGAATAGCAACAGCGGCTAAGCAAAGCTGTCAACTGTTTACCTTCTGTTAATGTACAtgtattgatttgatttaatgcCATccaggcctactgtatattgtttgtttgttttagtcaAGTTATTGGGTAGCCAAACTGCTAAGTTGTTAGTTTAGGCTTCACACCGACACTCTTGCACCTCCTCTTTGTGTCTCTCACACAAGTACtccttgtgtgtctgtttttaattCTATTTTACAACTGTCAGCTGGTCGAAATGGCAGCGTCGGAGGCTCAACGGGCGCCCACAGGCCCGCGGCAACGGTACGTGGACGAGCGGGGTAGTGCACTAGCTACTGAAGAGAGCCAAGTggcattaaaacaaagcagagaaTCAAAGATTCTGCAACTGTATCGAGCATCTCATTATCACCAGCCATATCcccattcatatttagacgcaacaaatgCTATATATCCATCTACAAAATAACCGGAAAAGTCAAACgttagacagaagtacaaagagttaATAGCTTTATCAATAATTGTTGATCATTTGGCAGAATAAATTATCTTTGTTGGAGAAACGCTCAATCTTGTGTCAAATTTCACTATGGTTCTTGGGTTATACTGTATGCAAGCCAAACTACACAGCGAAATGACACTGATTAAACCAATCTACAGTGCAGTCACAGTAATTAGTGTAATTAAAtggcattctttggacaactTGTATAGAGAGAGGAATTAGAGTATGCTATTACTTTATCACACCTTTACATGAGCAGACAGACGGCATTTAAGTCATTGCTTACAGAAGAACTCATCAGGAGCAAAGTCTGGCCTAAGTAAATTCCCCCCCCATACAGCTTTGATGCGTCTAAAAGCCAACATTACAGTCGTCACTTTTGTTgaacagagtagaaatggaagaagaggatatgtcCCCCCGTCTTAAaatcctagtgacgtccctgTGTACAACTAAAACCAGACGCACACATCCTTTTCGTCCTTTAGCTTAGATCTTTTagttaagatgttttttttaatttattttttactttttcttttattcattttgggAATAAATGTTCTGGAATATACATGTTGTCTATGTAACTTAGAACAAAAGGGAATTCTGCCTAACAAGtactctgaagaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatataaaaacccACAAATGTTGAACAGGTGGTTGCCAAAAGGGGAAACCAGAGTCCACAAGACTGTTGCCAATTGACTCAAGGGTAACCTTTACAATCCAGCCCTGACATTTAAATGCGCTTTGCCGTTAAATACATGCTTTATTTGAATCCAGTATGTCCAAATCTTAATGCTGAATAAACGACTTCCTCTTGTGTGCACTTCCCTTTTTGAAAGTCTTCACATGTATTGATTTCTGTATCCTGTGGTAGTGTCTCCCTTTGATATCTGTGTCCCACTTCCTCTGCCACGAATCAACACTGTGCGCGCAGCAGGTCTCCTAACTCGTGTTGAATTAAACTTATTGCATTTCCAAAGTTAA
>XM_039793019.1
ggacagaagaagaagaagaacactaCCGGAATtctacaagaagaagaagacgactACCGTTCATATGTCACCGACCTAAACACCGGAGCAGTCAGCGGAGAGGAGACGTTAGCCGGGTCCAAACAACGGCAGAAACCTCCCCCGAGCAGTATTAGTCTGCTGCTCAGACATGGACCGACACCGGAAACAGCTGGAGGAGGTTTTAAAACCGGAGACGAAGCCGCGAGGAgaagctTTACCTTCAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGACCCAAAGCCCCCCCACattaaagaagaacaggaggaACTTCGGATCAGTCAGGACgaagagcagcttcaagggccggaggaggctgatatcaccaagttcccattcactcctgtccctgtgaagagtgaggATGATGAAGATAAACATCAGTTCTCACAGCGTACTCGGAGGCAAACTGAAcagatggaaacagaagctgatggagaggactctgaaggaccagaaccagccatgAACTCCGATCCAGATACACATTCACAACCAGATACTGATGACGAgcctggagactcttctgaacctgagattGATACCAGTGCTGATTGGAAAGAGACCGGAGAACCTCCGTCAGGGGTCCAGATCATCTCTACTGAAAGTAGCCCAACACAGAAACTCTTCTCTAGCAGATGATGCGAGTGCCTGCTTGGCGTAAACCAGTTAGCATCCCCAACATGGACAACATCTACCAGCTAACCTGAAGAAAGATTGGGATGCAGCCCAACATTGACTGCGTCATTTGACCTCCAAGTCTGGCTTTCACcggaccaagctcaatcttctAAGATTAAACATTAGTCTggggggagtctgctctgtattttctactgcacaagatcAACGGGAATAGTTCAAATGATTCTGTACGCagttggatagtccttcaaccaatcacaccaacgatccgggtgacgttaacggcgacagcggcatcaacgtgCGGCTGCGCTTCGGTGCCCGCCGtgctgaatgtaaacaaaaaagctgcttggtcgcttctccaTCGTCATTGTGGTAAACCCGCCAATAATAGCGCagcaggtggataagccagtttgtgattggtcccccgCAGATTAGTaatggaagcaggatagataattGTACATGTTTCCAGTCTGAGCACCAGGGTGAAATCAAATCACTGGcggatcgggctgggtttacccggTCTATTCACCCAGCCCGGCTTCCCCACAATGATGGAGCTGCCAGCGAACAGAGGAGTTCTTTCTGTGGTAATGGGACCAACTGGGCTAGCAGTAGAATAGCAACAGCGGCTAAGCAAAGCTGTCAACTGTTTACCTTCTGTTAATGTACAtgtattgatttgatttaatgcCATccaggcctactgtatattgtttgtttgttttagtcaAGTTATTGGGTAGCCAAACTGCTAAGTTGTTAGTTTAGGCTTCACACCGACACTCTTGCACCTCCTCTTTGTGTCTCTCACACAAGTACtccttgtgtgtctgtttttaattCTATTTTACAACTGTCAGCTGGTCGAAATGGCAGCGTCGGAGGCTCAACGGGCGCCCACAGGCCCGCGGCAACGGTACGTGGACGAGCGGGGTAGTGCACTAGCTACTGAAGAGAGCCAAGTggcattaaaacaaagcagagaaTCAAAGATTCTGCAACTGTATCGAGCATCTCATTATCACCAGCCATATCcccattcatatttagacgcaacaaatgCTATATATCCATCTACAAAATAACCGGAAAAGTCAAACgttagacagaagtacaaagagttaATAGCTTTATCAATAATTGTTGATCATTTGGCAGAATAAATTATCTTTGTTGGAGAAACGCTCAATCTTGTGTCAAATTTCACTATGGTTCTTGGGTTATACTGTATGCAAGCCAAACTACACAGCGAAATGACACTGATTAAACCAATCTACAGTGCAGTCACAGTAATTAGTGTAATTAAAtggcattctttggacaactTGTATAGAGAGAGGAATTAGAGTATGCTATTACTTTATCACACCTTTACATGAGCAGACAGACGGCATTTAAGTCATTGCTTACAGAAGAACTCATCAGGAGCAAAGTCTGGCCTAAGTAAATTCCCCCCCCATACAGCTTTGATGCGTCTAAAAGCCAACATTACAGTCGTCACTTTTGTTgaacagagtagaaatggaagaagaggatatgtcCCCCCGTCTTAAaatcctagtgacgtccctgTGTACAACTAAAACCAGACGCACACATCCTTTTCGTCCTTTAGCTTAGATCTTTTagttaagatgttttttttaatttattttttactttttcttttattcattttgggAATAAATGTTCTGGAATATACATGTTGTCTATGTAACTTAGAACAAAAGGGAATTCTGCCTAACAAGtactctgaagaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatataaaaacccACAAATGTTGAACAGGTGGTTGCCAAAAGGGGAAACCAGAGTCCACAAGACTGTTGCCAATTGACTCAAGGGTAACCTTTACAATCCAGCCCTGACATTTAAATGCGCTTTGCCGTTAAATACATGCTTTATTTGAATCCAGTATGTCCAAATCTTAATGCTGAATAAACGACTTCCTCTTGTGTGCACTTCCCTTTTTGAAAGTCTTCACATGTATTGATTTCTGTATCCTGTGGTAGTGTCTCCCTTTGATATCTGTGTCCCACTTCCTCTGCCACGAATCAACACTGTGCGCGCAGCAGGTCTCCTAACTCGTGTTGAATTAAACTTATTGCATTTCCAAAGTTAA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU319439 False 352 lncRNA 0.40 2 16880639 16932584
XM_039793017.1 True 4059 mRNA 0.43 2 16917963 16932606
XM_039793018.1 False 2910 mRNA 0.44 3 16917962 16932606
XM_039793019.1 False 2907 mRNA 0.44 3 16917962 16932606

Neighbor

gene id symbol gene type direction distance location
trnat-agu_59 NA coding upstream 61962 16818604 ~ 16818677 (+)
trnat-agu_58 NA coding upstream 94558 16786008 ~ 16786081 (+)
trnat-ugu_44 NA coding upstream 95153 16785414 ~ 16785486 (+)
trnat-agu_57 NA coding upstream 95728 16784838 ~ 16784911 (+)
LOC120554340 NA coding upstream 98403 16780004 ~ 16782236 (+)
LOC120554204 NA coding downstream 48431 16981037 ~ 17000130 (+)
trnat-agu_64 NA coding downstream 96383 17028989 ~ 17029062 (+)
trnat-cgu_26 NA coding downstream 96766 17029372 ~ 17029444 (+)
trnat-ugu_46 NA coding downstream 119928 17052534 ~ 17052606 (+)
trnat-agu_65 NA coding downstream 122090 17054696 ~ 17054769 (+)
G235321 NA non-coding upstream 39810 16840186 ~ 16840829 (+)
G235284 NA non-coding upstream 285790 16594198 ~ 16594849 (+)
LOC120554281 NA non-coding upstream 314595 16563427 ~ 16566044 (+)
trnat-agu_52 NA non-coding upstream 357327 16523239 ~ 16523312 (+)
trnak-cuu_43 NA non-coding upstream 357641 16522926 ~ 16522998 (+)
G235332 NA non-coding downstream 2193 16934799 ~ 16935666 (+)
LOC120554286 NA non-coding downstream 200510 17133116 ~ 17146492 (+)
LOC120554285 NA non-coding downstream 250749 17183355 ~ 17204668 (+)
G235497 NA non-coding downstream 380403 17313009 ~ 17313865 (+)
G235501 NA non-coding downstream 412859 17345465 ~ 17345923 (+)
trnat-cgu_21 NA other upstream 118031 16762536 ~ 16762608 (+)
trnat-agu_56 NA other upstream 119067 16761499 ~ 16761572 (+)
trnat-ugu_43 NA other upstream 120209 16760358 ~ 16760430 (+)
trnat-cgu_20 NA other upstream 124002 16756565 ~ 16756637 (+)
LOC120554234 NA other upstream 267968 16388697 ~ 16612671 (+)
trnat-agu_63 NA other downstream 17815 16950421 ~ 16950494 (+)
trnat-cgu_25 NA other downstream 19091 16951697 ~ 16951769 (+)
als2b NA other downstream 949859 17882465 ~ 17938311 (+)
LOC120554216 mpp4 other downstream 1020533 17953139 ~ 17966226 (+)
G235775 NA other downstream 1234680 18167286 ~ 18171954 (+)

Expression


Co-expression Network