LOC120554218


Basic Information

Item Value
gene id LOC120554218
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16326093 ~ 16352877 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU319478
AAGATGCTACGACCTCCGTCTCATTGTTTGCATTTTAGCTCGTGTTGAGGACGGCGGAGTAACAGGCGCCAGTGTTTGGTGTCCTTCCAGAGAGAAACATCCCAAACTGCTGCATGAGGTTTTAAAACCTGAAACGGAGCTACAAAGAGCAgCTCGGGGAGAAGTTGAGGAGAGACACTTCGACATGGACTCTGAGAGGAAACTGTCAGCTGGCCAGCGGAGAGGTTGGCCAAAtcctctgggcgggcaaagcagagaaaggggaggtaaccttgctcctcatgacctcataacaagcaagttTCCAGATCGGCctttctgagctttcattttctcaaaggcagagcaggatactcagggctcggtttacacctatcaccatttcaagccactgggggaccataggcaggctgggggaacgcatattactgtaaaaaaacc
>XM_039792965.1
tttgtgtttccggGTCCCGGAAGATGCTACGACCTCCGTCTCATTGTTTGCATTTTAGCTCGTGTTGAGGACGGCGGAGTAACAGGCGCCAGTGTTTGGTGTCCTTCCAGAGAGAAACATCCCAAACTGCTGCATGAGGTTTTAAAACCTGAAACGGAGCTACAAAGAGCAgCTCGGGGAGAAGTTGAGGAGAGACACTTCGACATGGACTCTGAGAGGAAACTGTCAGCTGGCCAGCGGAGAGGTTGGCCAAAtcctctgggcgggcaaagcagagaaaggggagATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGACACAAagcccccacacattaaagaggaacaggaggaactctgGACCAGTCAGGacagagagcagcttcaagggcccgaggaggctgatatcagcAAGTTcacattcactcctgtccctgtgaagagtgaagatgacgAAGAGAAACCTCAGATCTTGCAGCTTCATCAAGGACAAACTGAAGAGAtgaaaacagaagctgatggagaggactgtggaggaccagaacaaGCCATGAAATCAGATCCATATACACTTTTACAACTGCCTAGCAGTGATGCCACCTCACAATGTTACATACAAGAAACTAAAGTGGCTGATGACTGGAATGAGACCACAGAACCTCAGACAAGTTTGAACTCCTTGAATAATGCTGAAGTCCCGGTAAGTCGTGTGACTTGTATTGCTGGTGAAAAACTGTCAAGCAGCCCTGAGTGTTGGGAACAATTTGCCTGCAAGACTCTTCTGAAGAAACACACGATCGCCGAAAAGATTCTGTTTAGCTGCAGCATTTGTGACCAAAGATTCACCTGGTATAAACAGCTCAGGAACCATCAGTGTGTTGGTCGTCAGATTCAAACTGAGGAGAACAGAGAGGCAGAGCCTCCAGCCAGCAGCTCAACTGAACAGATTAAAACAGAAGGtaatggagaggactgtggggGACCAGAACCAGACATGAACTTTTCTGATCCAGAGACTGATGACAGTTATGATTGGAAGGATACCAGAGAACCTCCGTCaggtttaaactctctgaataaTGATGAAGTCCCTGTCGGTGATTCCAGATGTAGTGCTGGTGAGAATCAAagtagctgctctgagtgtgggaaaagatGTGGCACCACTGGAaatctgaagagacacatgatatctcatacaggagagaaaccattttGCTGCTCAGTCTGTAGTAAATATTTTGCAAGGAGACGAcatttacagacacacatgaaAATCCACACAAGAGAGAAATTCTTAAGCTGCTCGGTCTGTGAGAAAGCCTTTACAGTGAGCGGAAATTTACTtaaacacatgagaatccacacaggagaaaaaccatTTAACTGCTCAGTCTGTATGAAGGCTTTTACAGAGAGTGGAAGTTTACATAAGCACATGGCAATCCACACAGGAAGCagaccatttagctgctcagtctgtaagaaagccTTTTCAGTCAGTGGAAATTTTCATAGACACATGAGAACCCACACAGgggagaaaccatttagctgctcagtctgtaagaaagcttttacagTGAGAGGAAGCTTAAAGACACACATGAGAAcgcacacaggagagaaaccatttagctgctcagtctgtaagaaagcttttacGGTGAGCGGCTATTTACAggcacacatgagaatccacacaggagagaaaccttttagctgctccgtctgtaagaaagcttttacagGCAATGGAagtttacagaaacacatgacagtccacacaggagagaaaccatttagctgctccgtctgtaagaaagctttttCAGTGAGTGGAAGTTTACTTAGACACATGAGAACCCAACACGTGAGAAACCATTTAGCCATGTAAGGTGGACAGTTAGTTTAGAAGGAGAGCAGATAACCTCAGTCAGGTTTGAaaactgaaaatgattgaatacTTTAAAAGTGATATGAGATGTAATATAAAGTGGGTCTTTAGAAATGCTTAACAAGTCTAAAATCCTGTAGTTAATAAGTTAggctttaaaatgtcttaaatgtTATTCTGACAGGTCTTTAAAATTTGATTGTATTATGAAGTTGAGATCCATGGAACTCCAAAGATAAACTTGTTCATTTTTGCAACTAAAAATGGACTTGAAATGAAACAAACAGCCCATCCATGCAACCCCAGCCCTCTTCAAAATGGCAGCCGTTTCCCAGCAGACTCTCCAGTCTCCACACCAGACTGTCATGTACCGTTACCTCACCATCCCTATAAAGGCAACAACTACCATtgttctttcctcttctccatTCCTTCGCTCCAAAATGACACAAGTGCCTGCTTAGAGTGAACAAGTTAGAATCACAGACTgggtggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU319478 False 441 lncRNA 0.51 3 16349688 16352857
XM_039792965.1 True 2428 mRNA 0.44 4 16326093 16352877

Neighbor

gene id symbol gene type direction distance location
LOC120554198 NA coding downstream 16082 16289101 ~ 16310011 (-)
LOC120553996 NA coding downstream 142200 16176729 ~ 16183893 (-)
trnat-cgu_13 NA coding downstream 357907 15968114 ~ 15968186 (-)
LOC120554208 NA coding downstream 359508 15953868 ~ 15966585 (-)
LOC120553994 NA coding downstream 421063 15885644 ~ 15905030 (-)
LOC120554221 NA coding upstream 3945 16356822 ~ 16365361 (-)
LOC120554797 NA coding upstream 21900 16374777 ~ 16374965 (-)
LOC120554247 NA coding upstream 27435 16380312 ~ 16386295 (-)
trnat-agu_40 NA coding upstream 33895 16386772 ~ 16386845 (-)
LOC120554212 NA coding upstream 57883 16410760 ~ 16854135 (-)
G235351 NA non-coding downstream 1857 16322888 ~ 16324236 (-)
G235242 NA non-coding downstream 4576 16321111 ~ 16321517 (-)
G235225 NA non-coding downstream 80696 16245127 ~ 16245397 (-)
G235215 NA non-coding downstream 125502 16200332 ~ 16200591 (-)
G235208 NA non-coding downstream 193847 16131586 ~ 16132246 (-)
trnat-cgu_15 NA non-coding upstream 1000 16353877 ~ 16353949 (-)
LOC120554287 NA non-coding upstream 152714 16505591 ~ 16506631 (-)
LOC120554273 NA non-coding upstream 209927 16562804 ~ 16567091 (-)
G235357 NA non-coding upstream 328850 16681727 ~ 16711192 (-)
G235413 NA non-coding upstream 413789 16766666 ~ 16775545 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other downstream 37943 16248694 ~ 16288150 (-)
LOC120554377 LOC103355861 other downstream 1312279 14966316 ~ 15013814 (-)
G234898 NA other downstream 1476356 14847834 ~ 14849737 (-)
arhgap1 arhgap1,LOC101474800,LOC102196105 other downstream 2036050 14194312 ~ 14290043 (-)
G234405 NA other downstream 3371968 12953090 ~ 12954125 (-)
G235387 NA other upstream 259106 16611983 ~ 16616316 (-)
LOC120554263 NA other upstream 383309 16736186 ~ 16742288 (-)
trnat-cgu_19 NA other upstream 403116 16755993 ~ 16756065 (-)
G235350 NA other upstream 711425 17064302 ~ 17103517 (-)
s100b LOC103360204,LOC104927403 other upstream 1381854 17734731 ~ 17745257 (-)

Expression


Co-expression Network