LOC120554273


Basic Information

Item Value
gene id LOC120554273
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16562804 ~ 16567091 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU319509
ATAACTTTGAAATAGCAAAAGAGGAAACAACCCCTTACAGTCTCACATAATGTGTCATTGAATGAAATACAAGTCAATGGAAGAATgccaattaatcaactaatcgtACAGAACTCTACAAAATACAACTCAGATGATCTGTCGGCTAACCCTTTCTCTGtttaattttctttaatttCATGCTGACAGATGCAGCCAAAAAACAAGGCACAAAAGTGGTGGAAGCCGAggaaaaaattaaaacctgGCTGAAGTACAGTGGAGACCGAaatggaggaagaaaaaaaagagcaacagAAAAAGAAAAGCAGATGCCTCCCCCTCATGCAGATTCCAGCAGCTGCGAAAGTGAATgaAAAGATGCTGCtacttctcctcctctgctccaTCTTCATCCTAAGAGCCACACACAATCTAATTTGCT
>XR_005638344.1
CATAACTTTGAAATAGCAAAAGAGGAAACAACCCCTTACAGTCTCACATAATGTGTCATTGAATGAAATACAAGTCAATGGAAGAATgccaattaatcaactaatcgtACAGAACTCTACAAAATACAACTCAGATGATCTGTCGGCTAACCCTTTCTCTGtttaattttctttaatttCATGCTGACAGATGCAGCCAAAAAACAAGGCACAAAAGTGGTGGAAGCCGAggaaaaaattaaaacctgGCTGAAGTACAGTGGAGACCGAaatggaggaagaaaaaaaagagcaacagAAAAAGAAAAGCAGATGCCTCCCCCTCATGCAGATTCCAGCAGCTGCGAAAGTGAATgaAAAGATGCTGCtacttctcctcctctgctccaTCTTCATCCTAAGAGCCACACACAATCTAATTTGCTTCAAATCTGC
>XR_005638345.1
CTTTTCTGCTCTTGCTGGCAAAAGTTGTCATAGATGCAGCCAAAAAACAAGGCACAAAAGTGGTGGAAGCCGAggaaaaaattaaaacctgGCTGAAGTACAGTGGAGACCGAaatggaggaagaaaaaaaagagcaacagAAAAAGAAAAGCAGATGCCTCCCCCTCATGCAGATTCCAGCAGCTGCGAAAGTGAATgaAAAGATGCTGCtacttctcctcctctgctccaTCTTCATCCTAAGAGCCACACACAATCTAATTTGCTTCAAATCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU319509 False 424 lncRNA 0.40 3 16562814 16567015
XR_005638344.1 True 435 lncRNA 0.40 3 16562804 16567016
XR_005638345.1 False 278 lncRNA 0.44 4 16562804 16567091

Neighbor

gene id symbol gene type direction distance location
LOC120554223 NA coding downstream 6349 16531962 ~ 16556455 (-)
trnat-cgu_16 NA coding downstream 57874 16504858 ~ 16504930 (-)
trnam-cau_66 NA coding downstream 62274 16500458 ~ 16500530 (-)
trnat-agu_41 NA coding downstream 106343 16456388 ~ 16456461 (-)
trnat-agu_40 NA coding downstream 175959 16386772 ~ 16386845 (-)
LOC120554206 NA coding upstream 49612 16616703 ~ 16638195 (-)
trnat-agu_55 NA coding upstream 161343 16728434 ~ 16728507 (-)
trnat-ugu_45 NA coding upstream 296786 16863877 ~ 16863949 (-)
trnat-agu_60 NA coding upstream 297342 16864433 ~ 16864506 (-)
trnat-cgu_22 NA coding upstream 304765 16871856 ~ 16871928 (-)
LOC120554287 NA non-coding downstream 56173 16505591 ~ 16506631 (-)
trnat-cgu_15 NA non-coding downstream 208855 16353877 ~ 16353949 (-)
LOC120554275 NA non-coding downstream 217539 16340797 ~ 16345265 (-)
G235351 NA non-coding downstream 238568 16322888 ~ 16324236 (-)
G235242 NA non-coding downstream 241287 16321111 ~ 16321517 (-)
G235357 NA non-coding upstream 114636 16681727 ~ 16711192 (-)
G235413 NA non-coding upstream 199575 16766666 ~ 16775545 (-)
G235427 NA non-coding upstream 306744 16873835 ~ 16876854 (-)
LOC120554268 NA non-coding upstream 308918 16876009 ~ 16916699 (-)
G235471 NA non-coding upstream 608531 17175622 ~ 17175960 (-)
LOC120554218 NA other downstream 209927 16326093 ~ 16352877 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other downstream 274654 16248694 ~ 16288150 (-)
LOC120554377 LOC103355861 other downstream 1548990 14966316 ~ 15013814 (-)
G234898 NA other downstream 1713067 14847834 ~ 14849737 (-)
arhgap1 arhgap1,LOC101474800,LOC102196105 other downstream 2272761 14194312 ~ 14290043 (-)
G235387 NA other upstream 44892 16611983 ~ 16616316 (-)
LOC120554263 NA other upstream 169095 16736186 ~ 16742288 (-)
trnat-cgu_19 NA other upstream 188902 16755993 ~ 16756065 (-)
G235350 NA other upstream 497211 17064302 ~ 17103517 (-)
s100b LOC103360204,LOC104927403 other upstream 1167640 17734731 ~ 17745257 (-)

Expression


Co-expression Network