XLOC_005043


Basic Information

Item Value
gene id XLOC_005043
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 406187 ~ 408631 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011054
aataaataaacaaaacaaaaagtaaagcTCTGCCTCAGTTTTGTCTTAttttccaacataaacattcTTAAGTGACATTCTTGGCAGATGTGTGGTATTTTGGGCATAACCTcacttattttaatacattttaataatgaatatcTTCAGCAATTTTGATTCTCCATGTTGATTTTACAAGGCTTTACACAAAACAGAAGACCTGAGGATGAAAATATTTCACCCACTAGCAGTTCTAAAACTGaaagagtttctttcttatgttgaacactaaagaattATAAGAAGTTTTTGTATGTTGTCTAATTTAGTTCGAATTAATTAGACTTTCAGTGATTCTGCAAGGGGTTCACAAAGTTTAGCACAGGGTTATTTGAACAATAACTGGTATTTTTTGATGTCTTGTGCTCTATAAACACAAACTATCTCACTCAGGACAGTACtactaaaaaaattaataagatctctcttattttgtcaaaattaatcCCATTTTCTGTGATTCTGTATTTTTGCTCAAGTAAGCAAATGTTGATTTtagtgtgaactgcccctttaaaagtAGTAACAGAGCTCTGTGTGCTCTTCTTCATCTGTACTTCTCTCTCTCCCTGTGAAACTATTGACATTTTCAGTGATTCTGCAGGGGGTTCACAAACTTTTGAACAGGGTTAGTTTTAGAATTTCAAATAGTTTTGTTATCTTTTCTCAAATTTATTGACATTTCACAGACTCTGCAcaaggttattttatttaataattgtaatCTTGTGAACTATATGTTAACAGGTTTTATGTAAATGATCTCACTCAGGACAGTGCTATATAAAAACAACAGTGAGTTAAACTTATTCACATTTTCAGTGATTCATGCAACTTCTGCATggggttattttaataatttctgctATTTTTTTGTCATGTGGACTATAAACATAAAATGTCTTAAGGCAGTATTAAAACATGTATttcgttggcagttcattccgctgtggcgacccctgattaataaagggactaagccgaaaagaaaatgaataaatgaatgcatgcattTAGTACAATCtctcttatttaattttttctccaAGTGGTTTACAAAATAACCCTGGTTTCGCACaggttattttaattaattatgtttttgtCTTGCAATTAATTTCATTTTGTAAAATATCTTACTCAGGATAGTACTAAACGTTATAAATAGCATATATTTAGTATAATCTCTTTGATTCTGCAAAGGGTTCACAAACTTTTGCTGCACAACACTTTAAATTGCTTTGTGTCAAAAAAACTCAGCTCAGAGTTGAAACCTCCAGCAGGAACACAGCTCTGCGTGCTCTTCTTCAGCAGTACTCTCTCCCTGTGGAACTATTGACATTTTCAGTGATTCTGCAAACTTTTGCACGgggttattttaataattccTGCAGTTTTTATGTCTTGTGGACCATAAACAAAATATCTTACTCAGGacagtaataattaaaaaataagatgcATTTAGTACAATCTAACTTTAGTTAAAATCCTGACATTTTCAGTGCTTTTGTAGGGGTTCACAAACTTTTGCATTTTGGGTTATTTTAGCAATCTCAGTTATTTTTATGTCTTGTGGACtataaacattaaatatcttTCTCAGGACAGTAAAATAGCATGCATTCAGTGTGATGATCTCTcttattttgtcaaaattaatcACATTTTAGTGAATCTGCAGGGGGTTCACAAACCTTTGCACAACACggttcttcttttgtgttcaaaaagaaAGAAGAGACTAAACTCGGGGTCTTGAAACCATTTCATGATGAGTAAACGGTgagtaaatatattcattttagtgtgaactgtcccttttaaaGCAGGAATGGAGCTCTGCGTGCTCTTCTTCAGCAgtactcctctctctctctctctccctgtgaAACTATTGACATTTTCAGCGATTCTGCAGGGGGTTCACAAACTTTCACAAAGCACTGTATCTTCTTTTTacattcaaaaagtaaaaaagcGACTAAACCCAGAGGCTTGAAACCACTTGATGATGAGCAAACGTTGATTTCTGcatgaactgcccctttaaaagcAGG

Function

GO:

id name namespace
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009314 response to radiation biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0009416 response to light stimulus biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0097272 ammonium homeostasis biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0098878 neurotransmitter receptor complex cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0005929 cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011054 True 2102 lncRNA 0.33 2 406187 408631

Neighbor

gene id symbol gene type direction distance location
XLOC_005042 NA coding downstream 50632 337808 ~ 355555 (-)
XLOC_005041 pts coding downstream 91288 312448 ~ 314899 (-)
XLOC_005040 adprm coding downstream 115372 288108 ~ 290815 (-)
XLOC_005039 map2k4b coding downstream 118554 281166 ~ 287633 (-)
XLOC_005037 NA coding downstream 126852 250081 ~ 279335 (-)
XLOC_005044 hs3st3l coding upstream 7080 415711 ~ 431249 (-)
XLOC_005045 dhrs7cb coding upstream 46921 455552 ~ 464007 (-)
XLOC_005046 bsk146 coding upstream 140967 549598 ~ 558201 (-)
XLOC_005047 wu:fj29h11 coding upstream 151881 560512 ~ 628160 (-)
XLOC_005048 sult2st1 coding upstream 221664 630295 ~ 645972 (-)
XLOC_005038 NA non-coding downstream 140986 262396 ~ 265201 (-)
XLOC_005035 NA non-coding downstream 225378 180200 ~ 180809 (-)
XLOC_005034 NA non-coding downstream 230668 171286 ~ 175519 (-)
XLOC_005057 NA non-coding upstream 663854 1072485 ~ 1085227 (-)
XLOC_005062 NA non-coding upstream 1044269 1452900 ~ 1453339 (-)
XLOC_005063 CU694266.1 non-coding upstream 1081841 1490472 ~ 1490588 (-)
XLOC_005067 NA non-coding upstream 1591388 2000019 ~ 2001490 (-)
XLOC_005068 NA non-coding upstream 1592005 2000636 ~ 2001824 (-)

Expression


Co-expression Network