LOC120554268


Basic Information

Item Value
gene id LOC120554268
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16876009 ~ 16916699 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU319562
TAACCTGGACCGGTTCGGATTGAATTTGGGGGTAACAGCTCAAACGAGATTTGGAAGAACATGACCTGAAAGTCTCCTTCAACGAACTATGACAAATAAAATGATGGCCATAATGAGCCTCAGAGGAAGAAGTGGGAAGGTTGCCTTCATGAAGACTCATCTCTACAAGATAATCTGACGCTGTCTTGAGCTCATATGATAAAACTACAACAAAAGTAGACAAATACATGGCCAAATACTTGATATATGCACCAGAGAGGACGGGTGGCAGTGGCAGAAAGAAGTAACAAGAAGGGAAGATTTAACCAGCAGTGTTCAATGTTGCCCAATGTTTGGGCCATTTTTCTAAAGGTTAAAGTTCGACGTGTAAAATTATCTTGCGTGAAATGTTGGCACACTTGCAGCTATGTAATAAATCATGTTTcataaaaaaaaaaaaaa
>XR_005638338.1
GAAAAAACATTAATTCAACGTCAAAACAACGTTGAACACCAAATAGTTGAAGTGGTGTTGTTAACTCACTTCGGATTCAACATAGAAATATCAACAATTTTTGAGTTTTACGTCAAATCAACATTATTTTTACGACCAtgacttttaaacattttgttgaaATATATCAGTAGAAAAATAACGTTGTTCCAACATCTAAACAATGCTGATCAATTAACTGTTGAAAAAGTGTTGATACATGAATAATGATACAACGGTGAAAGACCAACTCTGAAATTAAACGTTTGTTGAGTCGTGACAAAGAATTTCTTCTTTGGTCGTGATAAAAGCGCTTTCTACATCTCCCAGCGTACTTTGAGAGCAACTCCAGTCCGATTGATCATTTTGGAATGTCGTTCAATAAAAGGGCTTGATTGGAGGACGGCGTTTGTCCGTCAGACAAAGAGGGTGACTAGAACTGAATTCTATTGGCTCTGACGGTTCCAGACAACACCCGCTTGCGCATGCGCATGCGCAAAGTGGGTCTGTGTCGTCATCGTCAGGCTAGCTTAACCTGGACCGGTTCGGATTGAATTTGGGGGTAACAGCTCAAACGAGATTTGGAAGAACATGACCTGAAAGTCTCCTTCAACGAACTATGACAAATAAAATGATGGCCATAATGAGCCTCAGAGGAAGAAGTGGGAAGGTTGCCTTCATGAAGACTCATCTCTACAAGATAATCTGACGCTGTCTTGAGCTCATATGATAAAACTACAACAAAAGTAGACAAATACATGGCCAAATACTTGATATATGCACCAGAGAGGACGGGTGGCAGTGGCAGAAAGAAGTAACAAGAAGGGAAGATTTAACCAGCAGTGTTCAATGTTGCCCAATGTTTGGGCCATTTTTCTAAAGGTTAAAGTTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU319562 False 441 lncRNA 0.39 5 16876009 16916150
XR_005638338.1 True 911 lncRNA 0.40 4 16913598 16916699

Neighbor

gene id symbol gene type direction distance location
trnat-agu_61 NA coding downstream 2895 16873041 ~ 16873114 (-)
trnat-cgu_22 NA coding downstream 4081 16871856 ~ 16871928 (-)
trnat-agu_60 NA coding downstream 11503 16864433 ~ 16864506 (-)
trnat-ugu_45 NA coding downstream 12060 16863877 ~ 16863949 (-)
trnat-agu_55 NA coding downstream 147502 16728434 ~ 16728507 (-)
LOC120554233 NA coding upstream 99505 17016204 ~ 17026731 (-)
LOC120554231 NA coding upstream 227272 17143971 ~ 17160195 (-)
LOC120554205 NA coding upstream 268688 17185387 ~ 17208313 (-)
LOC120554225 NA coding upstream 301492 17218191 ~ 17234702 (-)
LOC120554244 NA coding upstream 361655 17278354 ~ 17285312 (-)
G235413 NA non-coding downstream 100464 16766666 ~ 16775545 (-)
G235357 NA non-coding downstream 164817 16681727 ~ 16711192 (-)
LOC120554273 NA non-coding downstream 308918 16562804 ~ 16567091 (-)
LOC120554287 NA non-coding downstream 369378 16505591 ~ 16506631 (-)
trnat-cgu_15 NA non-coding downstream 522060 16353877 ~ 16353949 (-)
G235471 NA non-coding upstream 258923 17175622 ~ 17175960 (-)
G235512 NA non-coding upstream 349561 17266260 ~ 17330177 (-)
G235542 NA non-coding upstream 448501 17365200 ~ 17365435 (-)
G235571 NA non-coding upstream 495287 17411986 ~ 17413880 (-)
G235635 NA non-coding upstream 595918 17512617 ~ 17544436 (-)
trnat-cgu_19 NA other downstream 119944 16755993 ~ 16756065 (-)
LOC120554263 NA other downstream 133721 16736186 ~ 16742288 (-)
G235387 NA other downstream 259693 16611983 ~ 16616316 (-)
LOC120554218 NA other downstream 523132 16326093 ~ 16352877 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other downstream 587859 16248694 ~ 16288150 (-)
G235350 NA other upstream 147603 17064302 ~ 17103517 (-)
s100b LOC103360204,LOC104927403 other upstream 818032 17734731 ~ 17745257 (-)
LOC120554370 LOC103370263 other upstream 1354379 18271078 ~ 18327103 (-)
LOC120554371 mbd5,LOC102784158 other upstream 1487527 18404226 ~ 18439418 (-)
LOC120554050 f2,LOC106587117,LOC106561958,LOC100136077,LOC101463683,LOC102200345,LOC102207201 other upstream 2606805 19523504 ~ 19529242 (-)

Expression


Co-expression Network