LOC120554305


Basic Information

Item Value
gene id LOC120554305
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 19032861 ~ 19037111 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU320166
ccaagGATAGCGGTGTTGTGCAGCGCCAAACTCCCCGCAAAAAGGCACGTTTTCCCCGGCTGTCAGGTACCCACAGGACGCCGCTGCATCACGGAGGttaaaaattataaattaaagagggaaaaaaaaagaagaaaaaaagctcaAAACAAACGCACCTAATTCCACCTGCGCAGGTAAAAGCAAAGTTAAGCTCCAACTCTGACGCGGGGCGCGCGGAAGTTTATTGTCCAACATTTTCGCCGAAAAAACGCCAGAAataataacagaaaaaaaaaccaaagtGAGGAGGCAACATACCTTGcgttttttggtttttaaagaAGGTGTCTTGCTTGGATATAGGAGTCGCGAGGAGGGATGATACTGCAGCGCGTTGTCGAGGAAGAAGCCCCCTGAAACGCACGCCACCTATCTTCACGGGAGGGGATAATTGAGGAGAGCCAAACGTGAGCATCTTCTGGGTTGAACgtgaagttttttttctctctctctccctccctctctctctctttctctctcctttctccccaCCCCCCTTCTCGCTCCTCTttgctttccctctctctctccatctctttttgAGTGAAACCAACTATGTCGGGCTTCGACGCGGAGCAAAGAACAGGCGACAGTgtgtttttccctctctctttctccatgtgagtgtgtgtgtgtgtgtgttagtgtagaAAAAGGGGGAGAAACTTGGAGCGCGTCCACGCCGGCCCGCAATCAtAAGTATTCCATAACTTCAGTGCCTCTCCAACTTGTCTGCATGGATCCAGAGGACTTGAATGCCAAATggagttttttagttttttgaggAGGGAGGTCAGACGCTCCTGTTTTACCTCGGGTCAAAAGTGGATCCAGTCCTGGGTGAATTATTGTCACGCGTAATTTACTGCCACGGTGCTTGCATGCAAACGAAGCAGTCtgccactttctctctctccctgtgtctcactctctctcccccccctgccccacacacacacacactctctctctctcccacacacacacacacacactcacccattTGAACCGTAGCTCCAGCTCTGTGTCCCATTCATCCAAGCGAGTTTGGAGTGGCACCTCTcgccttattttttatttttttgttttttttt
>TU320167
tttttttttgcccgTGAAGACTGACGCGAAATCATCCATTGTGAGGCTATTTCATTCAGAAAAGTTTCACAAGACGGAGGAAGAAGCCCCCTGAAACGCACGCCACCTATCTTCACGGGAGGGGATAATTGAGGAGAGCCAAACGTGAGCATCTTCTGGGTTGAACgtgaagttttttttctctctctctccctccctctctctctctttctctctcctttctccccaCCCCCCTTCTCGCTCCTCTttgctttccctctctctctccatctctttttgAGTGAAACCAACTATGTCGGGCTTCGACGCGGAGCAAAGAACAGGCGACAGTgtgtttttccctctctctttctccattaTAATCCTAATTATCATCATCATAGAAGTATTCCATAACTTCAGTGCCTCTCCAACTTGTCTGCATGGATCCAGAGGACTTGAATGCCAAATggagttttttagttttttgaggAGGGAGGTCAGACGCTCCTGTTTTACCTCGGGTCAAAAGTGGATCCAGTCCTGGGTGAATTATTGTCACGCGTAATTTACTGCCACGGTGCTTGCATGCAAACGAAGCAGTCtgccactttctctctctccctgtgtctcactctctctcccccccctgccccacacacacacacactctctctctctcccacacacacacacacacactcacccattTGAACCGTAGCTCCAGCTCTGTGTCCCATTCATCCAAGCGAGTTTGGAGTGGCACCTCTcgccttattttttatttttttgttttttttt
>XR_005638363.1
CTAAAGAAGGAAAAACCGGGATGCATATcgtccttttttttcctcccaagGATAGCGGTGTTGTGCAGCGCCAAACTCCCCGCAAAAAGGCACGTTTTCCCCGGCTGTCAGGTACCCACAGGACGCCGCTGCATCACGGAGGttaaaaattataaattaaagagggaaaaaaaaagaagaaaaaaagctcaAAACAAACGCACCTAATTCCACCTGCGCAGGTAAAAGCAAAGTTAAGCTCCAACTCTGACGCGGGGCGCGCGGAAGTTTATTGTCCAACATTTTCGCCGAAAAAACGCCAGAAataataacagaaaaaaaaaccaaagtGAGGAGGCAACATACCTTGcgttttttggtttttaaagaAGGTGTCTTGCTTGGATATAGGAGTCGCGAGGAGGGATGATACTGCAGCGCGTTGTCGAGGAAGAAGCCCCCTGAAACGCACGCCACCTATCTTCACGGGAGGGGATAATTGAGGAGAGCCAAACGTGAGCATCTTCTGGGTTGAACgtgaagttttttttctctctctctccctccctctctctctctttctctctcctttctccccaCCCCCCTTCTCGCTCCTCTttgctttccctctctctctccatctctttttgAGTGAAACCAACTATGTCGGGCTTCGACGCGGAGCAAAGAACAGGCGACAGTgtgtttttccctctctctttctccatgtgagtgtgtgtgtgtgtgtgttagtgtagaAAAAGGGGGAGAAACTTGGAGCGCGTCCACGCCGGCCCGCAATCAttaTAATCCTAATTATCATCATCATAGAAGTATTCCATAACTTCAGTGCCTCTCCAACTTGTCTGCATGGATCCAGAGGACTTGAATGCCAAATggagttttttagttttttgaggAGGGAGGTCAGACGCTCCTGTTTTACCTCGGGTCAAAAGTGGATCCAGTCCTGGGTGAATTATTGTCACGCGTAATTTACTGCCACGGTGCTTGCATGCAAACGAAGCAGTCtgccactttctctctctccctgtgtctcactctctctcccccccctgccccacacacacacacactctctctctctcccacacacacacacacacactcacccattTGAACCGTAGCTCCAGCTCTGTGTCCCATTCATCCAAGCGAGTTTGGAGTGGCACCTCTcgccttattttttatttttttgtttttttttacgcaCACAGGCTCTCCTTCGTGGGGCTCCACATATTCACTGTGAAAACGGATTACAGTCAGTGTGTGACCTATAGGGGGACCTTGTGCTTATATGAATATATTGATATAAatgagggggggagggggggattcataatttttgacagtttttttttttaaacttgattCTGTCAATTTCACATTAAAAGTGCAACATGTTGATGCACTGTGTGAGTGAATTAATTATTAGGACAATTTGTTTGTAATGTTTGGGATAAATTGGTTCATTGTCAACTTAAAACAGGCTGACAGATTTGTAATGATTGAAATCATTTGGAATGAATTGTGAGTTGCTGgtttttttattgcattgcTCGCTGCATgttctctcctctgtgtttgtatgtgttttttattttttatttctctgaatAAAGATTTGAAGCTTT
>XR_005638364.1
ccttctttttttttgcccgTGAAGACTGACGCGAAATCATCCATTGTGAGGCTATTTCATTCAGAAAAGTTTCACAAGACGGAGGAAGAAGCCCCCTGAAACGCACGCCACCTATCTTCACGGGAGGGGATAATTGAGGAGAGCCAAACGTGAGCATCTTCTGGGTTGAACgtgaagttttttttctctctctctccctccctctctctctctttctctctcctttctccccaCCCCCCTTCTCGCTCCTCTttgctttccctctctctctccatctctttttgAGTGAAACCAACTATGTCGGGCTTCGACGCGGAGCAAAGAACAGGCGACAGTgtgtttttccctctctctttctccatgtgagtgtgtgtgtgtgtgtgttagtgtagaAAAAGGGGGAGAAACTTGGAGCGCGTCCACGCCGGCCCGCAATCAttaTAATCCTAATTATCATCATCATAGAAGTATTCCATAACTTCAGTGCCTCTCCAACTTGTCTGCATGGATCCAGAGGACTTGAATGCCAAATggagttttttagttttttgaggAGGGAGGTCAGACGCTCCTGTTTTACCTCGGGTCAAAAGTGGATCCAGTCCTGGGTGAATTATTGTCACGCGTAATTTACTGCCACGGTGCTTGCATGCAAACGAAGCAGTCtgccactttctctctctccctgtgtctcactctctctcccccccctgccccacacacacacacactctctctctctcccacacacacacacacacactcacccattTGAACCGTAGCTCCAGCTCTGTGTCCCATTCATCCAAGCGAGTTTGGAGTGGCACCTCTcgccttattttttatttttttgtttttttttacgcaCACAGGCTCTCCTTCGTGGGGCTCCACATATTCACTGTGAAAACGGATTACAGTCAGTGTGTGACCTATAGGGGGACCTTGTGCTTATATGAATATATTGATATAAatgagggggggagggggggattcataatttttgacagtttttttttttaaacttgattCTGTCAATTTCACATTAAAAGTGCAACATGTTGATGCACTGTGTGAGTGAATTAATTATTAGGACAATTTGTTTGTAATGTTTGGGATAAATTGGTTCATTGTCAACTTAAAACAGGCTGACAGATTTGTAATGATTGAAATCATTTGGAATGAATTGTGAGTTGCTGgtttttttattgcattgcTCGCTGCATgttctctcctctgtgtttgtatgtgttttttattttttatttctctgaatAAAGATTTGAAGCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU320166 False 1136 lncRNA 0.49 4 19033291 19036254
TU320167 False 780 lncRNA 0.47 4 19033291 19037106
XR_005638363.1 True 1637 lncRNA 0.44 4 19032861 19036299
XR_005638364.1 False 1292 lncRNA 0.44 4 19032861 19037111

Neighbor

gene id symbol gene type direction distance location
acvr2ab acvr2a,LOC102784913,LOC103371821 coding downstream 509845 18465948 ~ 18523016 (-)
LOC120554003 LOC103370269 coding downstream 630648 18357104 ~ 18402213 (-)
LOC120554329 LOC100698054,LOC102783597 coding downstream 679518 18342713 ~ 18353343 (-)
LOC120554384 NA coding downstream 692442 18328508 ~ 18340419 (-)
LOC120554369 LOC104960229 coding downstream 763192 18262836 ~ 18269669 (-)
kynu kynu,LOC102785701 coding upstream 514325 19551436 ~ 19581258 (-)
bzw1a LOC107384676,LOC108245120,LOC107082828,LOC103371116,LOC101480137,LOC103457358 coding upstream 571511 19608622 ~ 19621651 (-)
aox6 NA coding upstream 584991 19622102 ~ 19654312 (-)
pnpla4 pnpla4 coding upstream 711960 19749071 ~ 19755969 (-)
dhrsx dhrsx,LOC104961879,LOC108244136,LOC106908010,LOC106908011 coding upstream 1338482 20375593 ~ 20380492 (-)
G235935 NA non-coding downstream 113060 18919555 ~ 18919801 (-)
G235933 NA non-coding downstream 138354 18893907 ~ 18894507 (-)
G235931 NA non-coding downstream 245239 18787369 ~ 18787622 (-)
G235930 NA non-coding downstream 284216 18748430 ~ 18748645 (-)
G235929 NA non-coding downstream 435653 18596999 ~ 18597208 (-)
G235937 LOC106936898 non-coding upstream 207 19037318 ~ 19105325 (-)
G235946 NA non-coding upstream 97766 19134877 ~ 19135133 (-)
G235947 NA non-coding upstream 118023 19155134 ~ 19155510 (-)
G235948 NA non-coding upstream 140334 19177445 ~ 19177800 (-)
G235957 NA non-coding upstream 223457 19260568 ~ 19260832 (-)
LOC120554371 mbd5,LOC102784158 other downstream 593443 18404226 ~ 18439418 (-)
LOC120554370 LOC103370263 other downstream 705758 18271078 ~ 18327103 (-)
s100b LOC103360204,LOC104927403 other downstream 1287604 17734731 ~ 17745257 (-)
G235350 NA other downstream 1929344 17064302 ~ 17103517 (-)
trnat-cgu_19 NA other downstream 2276796 16755993 ~ 16756065 (-)
LOC120554050 f2,LOC106587117,LOC106561958,LOC100136077,LOC101463683,LOC102200345,LOC102207201 other upstream 486393 19523504 ~ 19529242 (-)
G236111 sts,LOC108241831 other upstream 694208 19731319 ~ 19732537 (-)
G236277 adarb1,adarb1b,LOC105907970,LOC107754003 other upstream 1330230 20367341 ~ 20368433 (-)
G236340 NA other upstream 1689292 20726403 ~ 20728427 (-)
G236349 NA other upstream 1723597 20760708 ~ 20760992 (-)

Expression


Co-expression Network