G236156 (nlgn4)


Basic Information

Item Value
gene id G236156
gene name nlgn4
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 19977822 ~ 19978682 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU320426
CCTGTTTTAGCAAAGTTCGTCCAGTAGGTCATGACGACAGCACTCAGCATCACGTCGTTCTTCGAAAAGTTGCAGTTGAAAAGATCTGTGGGGCCGATCATGGGGATCCCAAAGACGTAAGGTACTTCATCGCCGTGCGCCGAGTCGGCCCAGCTGGGCTTCATGTCGCTCTGACAGTGGTGGTAGAAGGCGTAGAAGTAAGTTGGCGAGCCGTACTGAGCGTGCAGGTCCGCCGTGGCCACCGCCGGCGCCACCCACTGGTGATCGGTGAACAGAGCCACCAGAGTCTTGCGCCGGGTCTCCGGGTTCTCCTTGTCCGCCCAGTCCGTGTACATGAATTTAATTGTCTCGCGCAGAGTGTCCTTGCCCTCCGGGTAGCCGTAAAGATGATCCACAAAGTCCGACACGGCAAAGTCAAAATCATTGGCAGACACGCCGTCCTCGCTGTCCACGATGCCGTCCACAAATTTAAACCCCTCGCCCTGATTGACCCCAAGCATGATGTCGTAGTTGAGGAACTCGCCTTGCTCCATTAGGATTTGGGGGTCGTCTGGGATTACGTCGCCGTCAATCACAGGCCCGAAGGCGATGTGGTACTTTGCAGGTGTGATGTACTGCTCGATCAGCTCCTTGTAGTTCTTGTTCTGCAGACACTCCACCAGGTCAATTGTGTCCAACATGTTGCAGCCCACCTTCTCTGCCAGGGCCCGCGTGTACTTGGCGGGCTGGTAGTTGACCGCCCAGCTGGACAGCGCCGTGCCGCTCTGGATGATGGCTTTCTGGAACAGATCTGAGGTtggagacacaaaaacaaaagaaatagacacacacgttctttgttcaagcagcaattaggCCTTA

Function

NR:

description
neuroligin 4 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU320426 True 861 lncRNA 0.55 1 19977822 19978682

Neighbor

gene id symbol gene type direction distance location
pnpla4 pnpla4 coding downstream 221853 19749071 ~ 19755969 (-)
aox6 NA coding downstream 323510 19622102 ~ 19654312 (-)
bzw1a LOC107384676,LOC108245120,LOC107082828,LOC103371116,LOC101480137,LOC103457358 coding downstream 356171 19608622 ~ 19621651 (-)
kynu kynu,LOC102785701 coding downstream 396564 19551436 ~ 19581258 (-)
acvr2ab acvr2a,LOC102784913,LOC103371821 coding downstream 1454806 18465948 ~ 18523016 (-)
dhrsx dhrsx,LOC104961879,LOC108244136,LOC106908010,LOC106908011 coding upstream 396911 20375593 ~ 20380492 (-)
LOC120554635 LOC104961873,LOC103363323 coding upstream 464299 20442981 ~ 20456063 (-)
LOC120554361 NA coding upstream 815664 20794346 ~ 20802270 (-)
vps16 vps16 coding upstream 874883 20853565 ~ 20867800 (-)
dytn NA coding upstream 987256 20965938 ~ 21075255 (-)
G236155 nlgn4x non-coding downstream 63852 19913309 ~ 19913970 (-)
G236152 NA non-coding downstream 104435 19873177 ~ 19873387 (-)
G236103 NA non-coding downstream 254917 19720632 ~ 19722905 (-)
G236100 NA non-coding downstream 278744 19696468 ~ 19699078 (-)
G236094 NA non-coding downstream 309830 19663910 ~ 19667992 (-)
G236157 nlgn4x non-coding upstream 4023 19982705 ~ 19986993 (-)
G236175 NA non-coding upstream 60319 20039001 ~ 20039265 (-)
G236177 NA non-coding upstream 70818 20049500 ~ 20049889 (-)
G236190 NA non-coding upstream 115543 20094225 ~ 20094730 (-)
G236193 NA non-coding upstream 164089 20142771 ~ 20142995 (-)
G236111 sts,LOC108241831 other downstream 245285 19731319 ~ 19732537 (-)
LOC120554050 f2,LOC106587117,LOC106561958,LOC100136077,LOC101463683,LOC102200345,LOC102207201 other downstream 448580 19523504 ~ 19529242 (-)
LOC120554371 mbd5,LOC102784158 other downstream 1538404 18404226 ~ 18439418 (-)
LOC120554370 LOC103370263 other downstream 1650719 18271078 ~ 18327103 (-)
s100b LOC103360204,LOC104927403 other downstream 2232565 17734731 ~ 17745257 (-)
G236277 adarb1,adarb1b,LOC105907970,LOC107754003 other upstream 388659 20367341 ~ 20368433 (-)
G236340 NA other upstream 747721 20726403 ~ 20728427 (-)
G236349 NA other upstream 782026 20760708 ~ 20760992 (-)
rgn LOC103371141 other upstream 864810 20843492 ~ 20853383 (-)
G236646 NA other upstream 883998 20862680 ~ 20863311 (-)

Expression


Co-expression Network