G236179 (LOC104947167)


Basic Information

Item Value
gene id G236179
gene name LOC104947167
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20070106 ~ 20070640 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU320449
tattaatctaacaattatgaagagaagcagttgggccagttaggtgaacactgcaactcctcactccctaactataagctttatcaaataggagagttttaagttcattcttgaatgaggtgacagtttctgccccccgaacccagatcgggagctggttccataggagaggagcctgataactgaaggctctagctcccattctacttttagagactctaggtaccaccagtaactctgcattctgggagcgcagtgctctagtgggacaatagggtattaggagctcttctagatatgatggtgctagaccatttagagctttgtaggtcaagagaaggactttaaactcaatcctggattcaacaggaagccaatgcagagaagctaatacaggagaaatatgatctcttttcttagttcttgtgagaacacgtgctgcagcattctggatcagctggagagtcttaagagacttatttgagcaacctgacagtagggaattacaatagtccagcctggaagtaacaaatgc

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104947167, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU320449 True 535 lncRNA 0.44 1 20070106 20070640

Neighbor

gene id symbol gene type direction distance location
LOC120554034 NA coding upstream 35377 20029026 ~ 20034729 (+)
LOC120554605 pudp coding upstream 218152 19839605 ~ 19851954 (+)
LOC120554006 NA coding upstream 237898 19819866 ~ 19832208 (+)
LOC120554574 NA coding upstream 251623 19816765 ~ 19818483 (+)
sts sts coding upstream 337563 19712684 ~ 19732543 (+)
mxra5a NA coding downstream 187703 20258343 ~ 20271296 (+)
fam207a NA coding downstream 241884 20312524 ~ 20341903 (+)
LOC120554617 LOC108431163 coding downstream 252852 20323492 ~ 20325622 (+)
gyg2 NA coding downstream 338372 20409012 ~ 20419118 (+)
LOC120554612 rcan1,LOC103389732 coding downstream 389334 20459974 ~ 20480326 (+)
G236176 NA non-coding upstream 20242 20049465 ~ 20049864 (+)
G236148 NA non-coding upstream 207787 19862103 ~ 19862319 (+)
G236063 NA non-coding upstream 242285 19667989 ~ 19827821 (+)
LOC120554317 NA non-coding upstream 285341 19756005 ~ 19784765 (+)
G236060 NA non-coding upstream 412836 19657041 ~ 19657270 (+)
G236187 NA non-coding downstream 12388 20083028 ~ 20083281 (+)
G236189 NA non-coding downstream 23708 20094348 ~ 20094879 (+)
G236196 NA non-coding downstream 115013 20185653 ~ 20185880 (+)
G236199 NA non-coding downstream 137090 20207730 ~ 20207936 (+)
LOC120554047 NA non-coding downstream 212516 20283156 ~ 20284898 (+)
G236162 NA other upstream 72439 19996799 ~ 19997667 (+)
nlgn4xa nlgn4x,nlgn4a,nlgn4,LOC102297792,LOC102198379,LOC102795219 other upstream 83377 19897092 ~ 19986729 (+)
anos1a LOC103358938 other upstream 371211 19671872 ~ 19698895 (+)
G235778 NA other upstream 1888294 18176825 ~ 18181812 (+)
G235775 NA other upstream 1898152 18167286 ~ 18171954 (+)
prkx prkx other downstream 137689 20208329 ~ 20234852 (+)
LOC120554192 adarb1,dhrsx,LOC103363325,LOC104961879,LOC106908010,LOC106908011,LOC103156197,LOC103156196 other downstream 284662 20355302 ~ 20377740 (+)
cd99 NA other downstream 312678 20383318 ~ 20406326 (+)
LOC120554724 plcd4,LOC103363317 other downstream 417027 20487667 ~ 20511076 (+)
LOC120554627 runx1,LOC104961881 other downstream 524455 20595095 ~ 20635922 (+)

Expression


Co-expression Network