G236248 (LOC104951987,LOC103359801)


Basic Information

Item Value
gene id G236248
gene name LOC104951987,LOC103359801
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20270484 ~ 20271413 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU320520
GCAGCTCTACTAAATGCTCAAAATGGGAGGCCCATTGAAAATTCCCAGTGATgtggattaaacacaaaataTGATCAATGTTTTGCCTCTATACAGAACACACTCAAAGCACCACTGCAGGCTTTCATCGACTTATTATTTCATCACTGTGACAGCAGTTTTTACAACATTTTGATCATTACAAACATTAGCTGCTTTTAACTGGGCAGTTCCCTGGGCATACAGTATGCAAACACTCCATTTTGAATAGGAAAATTATTCAGAACACATTGAGGATTGTAGCTTTTGAGTCTTTGCCAATGGCATTCCTGGCTGTGCATCGATAAACACCAGCATCTCTTTGCGTCGGATTCTGGATGACGAGGGAACCTTGTGGATGGAGATACTTGTTCCCAAAAAGGCGTGGCTGTGCACTGACAGCCAAGCGGGTTTTATCAGGTGTTTCCCATGCTACCTCAACTCTAGGGATCCCAGTTGCTACGCAGTTCAACTGAACAGCTACTCCATGTTTGGCATAAGTCACAGAGGGAGGGCCGTTGGTGATTCGAGGCGGGTATGCCATCACAATTACTGACACAGAAAGCTGAGAGCTGCCGTATTCGTTCGCAGCTCGACAACCATACAAGCCCCGATCATACATGGATACTTGATGGATGGAAAGTGTCCCATTAGGCAGCACGGCATACCGTCCAGCTCTCTGCGGCCTGTTGAGGACAACCCCACTTGGAAGCGTCCATGTCAGTCTAAAAGGTTTGGCATTGGTTAGACAATGAAGCAAAAGTCCTTCGCCGTTTACGACGCTGACCGGAGAGTTGTAACGGTTGATAATCTCTGGCTTTTTCCCCGGGGACAATGTGAATGTACGCTCCACAAGCCCTCGAGAGTTATGCCCCAGACAGCGGTACATACCAGCTTCAGCCACGGAAGGGT

Function

NR:

description
PREDICTED: immunoglobulin superfamily member 10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU320520 True 930 lncRNA 0.47 1 20270484 20271413

Neighbor

gene id symbol gene type direction distance location
pnpla4 pnpla4 coding downstream 514515 19749071 ~ 19755969 (-)
aox6 NA coding downstream 616172 19622102 ~ 19654312 (-)
bzw1a LOC107384676,LOC108245120,LOC107082828,LOC103371116,LOC101480137,LOC103457358 coding downstream 648833 19608622 ~ 19621651 (-)
kynu kynu,LOC102785701 coding downstream 689226 19551436 ~ 19581258 (-)
acvr2ab acvr2a,LOC102784913,LOC103371821 coding downstream 1747468 18465948 ~ 18523016 (-)
dhrsx dhrsx,LOC104961879,LOC108244136,LOC106908010,LOC106908011 coding upstream 104180 20375593 ~ 20380492 (-)
LOC120554635 LOC104961873,LOC103363323 coding upstream 171568 20442981 ~ 20456063 (-)
LOC120554361 NA coding upstream 522933 20794346 ~ 20802270 (-)
vps16 vps16 coding upstream 582152 20853565 ~ 20867800 (-)
dytn NA coding upstream 694525 20965938 ~ 21075255 (-)
G236247 NA non-coding downstream 1817 20267867 ~ 20268667 (-)
G236246 NA non-coding downstream 3753 20266486 ~ 20266731 (-)
G236245 NA non-coding downstream 4003 20266043 ~ 20266481 (-)
G236232 NA non-coding downstream 9416 20233669 ~ 20261068 (-)
G236198 NA non-coding downstream 63935 20206307 ~ 20206549 (-)
G236249 LOC103376870 non-coding upstream 62 20271475 ~ 20272734 (-)
G236261 NA non-coding upstream 34080 20305493 ~ 20312827 (-)
G236279 NA non-coding upstream 101587 20373000 ~ 20373241 (-)
G236282 NA non-coding upstream 111738 20383151 ~ 20394034 (-)
G236293 NA non-coding upstream 205773 20477186 ~ 20479038 (-)
G236111 sts,LOC108241831 other downstream 537947 19731319 ~ 19732537 (-)
LOC120554050 f2,LOC106587117,LOC106561958,LOC100136077,LOC101463683,LOC102200345,LOC102207201 other downstream 741242 19523504 ~ 19529242 (-)
LOC120554371 mbd5,LOC102784158 other downstream 1831066 18404226 ~ 18439418 (-)
LOC120554370 LOC103370263 other downstream 1943381 18271078 ~ 18327103 (-)
s100b LOC103360204,LOC104927403 other downstream 2525227 17734731 ~ 17745257 (-)
G236277 adarb1,adarb1b,LOC105907970,LOC107754003 other upstream 95928 20367341 ~ 20368433 (-)
G236340 NA other upstream 454990 20726403 ~ 20728427 (-)
G236349 NA other upstream 489295 20760708 ~ 20760992 (-)
rgn LOC103371141 other upstream 572079 20843492 ~ 20853383 (-)
G236646 NA other upstream 591267 20862680 ~ 20863311 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014222 NA coding CM030128.1 CM030128.1 5595455 ~ 5607754 (+)