LOC120554192 (adarb1,dhrsx,LOC103363325,LOC104961879,LOC106908010,LOC106908011,LOC103156197,LOC103156196)


Basic Information

Item Value
gene id LOC120554192
gene name adarb1,dhrsx,LOC103363325,LOC104961879,LOC106908010,LOC106908011,LOC103156197,LOC103156196
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20355302 ~ 20377740 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU320543
TCTCAAAGGCAATTTGTTTATTAGCATTTATTAACGTATTGTAATAAATGGGACATCTTCCTTAATCTGTTGAtacaacaatattcacattgactataaattaatattatattCATTCTCAGTGATCATGGGAAAAATGATTGTGCAatatcatcaaataaactggaCATTTGATTAGAATGTCTCCAGGTCTAAAACGTACAGTTCATCCGACAGACCAGAGGTGATTAGAGGAGGAGTCAGGCCTTCTGAAGGCCCACCAGCTCGCAGCTCTTCTTCCACAGCTTGGCTTGCAGCTCTGAGTCGTAGGAAGTGTCCGAGGACTGCTTCCTGTGGCCGTTGTACAGGTAAcagccccccaccccctccatcTCAGAGGCAGCTGCAGCGTACACCGATATGGACGCTCCCTCGGCTGGAGTCCTGAACAGGATCTTGGCCACGGGTTTCTTCAGCGCCTGCACGATACTCCACAGGTTGTCGTAGAGCGCCGTGTCCACCATGCCGGGGTCCACAGCGCTAACGGTCACCGGGAAGCCGCCGGCCGTCAGCTGCTCCTGCAGGTGGTAGGTGAAGAGCACCAGAGCCAGTTTGCTCTGGGCGTAGGCGCTGTGGGAACTGTAGCAGATCCGTCTGTTTAGGTCGTCCATGTGCATCTCTCCTGCGTAGTGCGTCGCCGAGGACATGTTGATGATCCGGGAGCAGCGGCCTGGCCGGCCCGAGCGCTTCAGCGTGTCCAGGAGCAGGTTGGTCAGCAGGAAGTGACCCAGGTAGTTCAAAGCAAAGTGGATCTCAACGCCATCCTCCGTCTGCCCCTCAGGAACCATCATGATTCCCGCTACACCAGAGAACGACACAGCGTTTTAGAGAGGTCATTCAGGGGCGGAGCTTCTGGCTC
>XM_039792914.1
TCCGTCGTCTGTGGAAGTACACTCTGACTCTATGCTGCAGGGACAGATTAGTTATGGTTCTGCTGCCGGACGCCACTGCCGTCTGCTGTGTGATCGTCCGCCGCTGCCGGGGGgggcggaggaggaggaagagacgCTGTGAGCGCAGAGGTCGAGTGGGAGATCGGCTACCTCCAAACCAACGGAGGCTCCTCACCATAGACAGGGACAAAGTTAAAAGCATGAGTTCACGGCGCACAGATGTTAAGGAAAATCGGAACTCGGACAACCTCTTCTCCAAAGAGGGGGTTGCAGCTGACGCTACTCAGCTCCCCAATGGGAGTGCTGGGGGAGGAAGGAAAAGGAAACGTCCCTTAGAGGAGGGCAATAACGGGCATGCCCATTCCAAGTACAGGCCCAAGAAGCGTAAGAAAGTCACTGGGCCCATTCTGCCTAAGAATGCCCTAATGCAGCTAAATGAGCTCAAGCAAGGGCTGCAGTACAAACTGCTCTCTCAGACCGGGCCGGTCCATGCGCCCGTCTTCGCGATGACCGTAGAGGTCAACGGGCTGCTCTTCGAGGGTTCTGGTCCTACGAAGAAGAAGGCCAAGCTGAACGCAGCGGAGAAGGCCCTGCGCTCCTTCGTGCAGTTCCCCAACGCATCCGAAGCGCACATGGCCATGGGCCGGTCTCTGTCTGGTCACACAGACTTCACCTCGGACCAGGCGGAACTTCCTCACATGCTCTTCAACGCCTTTGAGACATCCAGTCCCGTAGATGACCCGTTTTACCTCGCATCCAACAGCTCTTTCGGAATCAAGTACCCATTGCTACCCTCCCCTGTCCCACCTTTACCCCAACACCCTATGGGGGCACCCTTACCCCCACACCCTATGGGTGCACCCTTACCCCCACACCCTATCGGGGCACCCTTACCCCCAGCCCCATCCGCCTTCATGTCCCCTACAAGCAGCAAGAACCCTGTCATGATCCTGAATGAGTTGCGGCCGGGCCTAAAGTATGACTTTGTGTCAGAGATCGGGGTGAGCCACGGCAAGAACTTTGTCATGTCCGTGACCGTAGATGCGCAGAACTTCCAGGGTTCTGGGCGGAACAAAAGGCTGGCCAAGGTCCGGGCTGCACAGGCGGCTCTGTTTTCTCTGTTTAACATGCAGCTGGATCAGGCTCCGTCCAGACAGCCGATACCCAGAGAAGGACTGCAGCTTCACCTGCCACAGGTCCTGGCAGACGCCGTCTCTCGTCTGGTCGTCGAAAAGTTCAGCGACCTCACCGAGGACTTCACGGCTCCACACGCTCAACGGAAAGTTCTGGCTGGTGCCGTCATGACAACGGGCACAGATGTGAAGGAGGCTCAGGTGATCTGCGTTACCACGGGAACAAAGTGCATCAACGGGGAATACATGAGCGACAGAGGTTTGGCCCTCAACGACTGCCACGCTGAGGTTTTGGCTCGCCGCTCGCTCGTCCGGTTCCTGTACTTGCAGCTGGAGCATTTCCTCAGTGACcaggaagaggagcagcagaAGTCCATCTTCAGCCAGTGTGAACACAGACGAGGTTTTAGACTGAAGGAAAACGTTCAGTTCCACCTTTACATCAGCACATCGCCCTGCGGAGACGCCCGCATCTTCTCTCCGCATGAAGCCGCCATGGAGGATCAGGGTGATAGACACCCAAACAGAAAGGCCCGCGGGCAGCTGCGCACTAAGATCGAGTCTGGTGAAGGAACCATCCCAGTCCGCTCCAGTAACCCCATTCAGACGTGGGACGGGGTTCTCCAGGGCGAGAGGCTGCTCACCATGTCCTGCAGTGACAAGATAGCCAgGTGGAACGTGGTTGGACTACAAGGCTCTCTGATGAGCTACTTCACCGAGGCCGTCTACTTCTCCAGCATCATCCTGGGCAGCCTGTACCATGCAGACCACTGCTCCAGAGCCATGTACCAGAGGATCACCGAGATCCAGGACCTGCCGCAGTCCTTCAGCCTCAACAGACCGCTGCTCAGCGGAATCACGAACACGGAGGCTCGTCAGCCGGGAAAAGCTCCTAACATCAGCATGAACTGGACGCTGGGAGACCCAGGCTTGGAGGTGATCAATGCCACCACGGGAAAAGATGATCTGGGCCGACCCTCGCGGCTCTGCAAACACGCTCTGTTCAGCCGCTGGATGCGCCTCCACTGCAAGCTGTCATCCAGCCTGCGGATCCGAACACTGCGACCTGGCAGCTACCAGGAGGCCAAGGCGTCAGCGGCAGAGTACCACAGCGCCAAGCAGACACTCTTCAGAGCTTTCCACACAGCCGGGCTGGGCACCTGGGTGAAGAAACCCGTAGAGACGGACCAGTTTGCTCTCGCTGACTGAGGTAGAGAGTTAGTGTTTGGTGTCTTTGACAGAACACATGTCTGGGATCAGTTTTAGCGGAGTAAGCCATGGACTGGAAGAACGAGGTATGAAATCCACATGTCCGAATCCATGGATTTAATGTTCCACCTTTTTGTCATGCACTAAAAGAAAGCTATTTCGGcaatttttctcaaaatattcagacttttgtTCTTTAAGTATTCAAGGTTTTTCGCAAAATAATGCAAGCCTTTTTTgcaaaatattctgacttttttctaaaATCCATGGATTTGGTGGAAAAAAAGCCAGTATATTTTAACGTTCCACCTCTGTTTTAATAGCCTAATGCTGCTCCCTCTCAGCCAGCACTATACATGCTTATTCAGTTAGGCAACTTTTTACAAgggacaaatgtaaaaaaatttgGAATTGTAAACTGCATTGCTGGCTAATATGTGTGATCATAACAGATTGGTAGGAAAGCTACCGTAAAAGGTTTATCGTGTATCAGTGTTGTGAAACTTTACAATGTCCCCCTGCAGTTTGTAAAAACTGTTTTTTCTGCTTTCTTGCAGTTGCACATTTAAGATCTCAAAGATATTTTCAAGCTGAGAATAGGCACACTCAGAAAAAGTCAGGAGGCTGAGTCTCTCAA
>XM_039792915.1
TCCGTCGTCTGTGGAAGTACACTCTGACTCTATGCTGCAGGGACAGATTAGTTATGGTTCTGCTGCCGGACGCCACTGCCGTCTGCTGTGTGATCGTCCGCCGCTGCCGGGGGgggcggaggaggaggaagagacgCTGTGAGCGCAGAGGTCGAGTGGGAGATCGGCTACCTCCAAACCAACGGAGGCTCCTCACCATAGACAGGGACAAAGTTAAAAGCATGAGTTCACGGCGCACAGATGTTAAGGAAAATCGGAACTCGGACAACCTCTTCTCCAAAGAGGGGGTTGCAGCTGACGCTACTCAGCTCCCCAATGGGAGTGCTGGGGGAGGAAGGAAAAGGAAACGTCCCTTAGAGGAGGGCAATAACGGGCATGCCCATTCCAAGTACAGGCCCAAGAAGCGTAAGAAAGTCACTGGGCCCATTCTGCCTAAGAATGCCCTAATGCAGCTAAATGAGCTCAAGCAAGGGCTGCAGTACAAACTGCTCTCTCAGACCGGGCCGGTCCATGCGCCCGTCTTCGCGATGACCGTAGAGGTCAACGGGCTGCTCTTCGAGGGTTCTGGTCCTACGAAGAAGAAGGCCAAGCTGAACGCAGCGGAGAAGGCCCTGCGCTCCTTCGTGCAGTTCCCCAACGCATCCGAAGCGCACATGGCCATGGGCCGGTCTCTGTCTGGTCACACAGACTTCACCTCGGACCAGGCGGAACTTCCTCACATGCTCTTCAACGCCTTTGAGACATCCAGTCCCGTAGATGACCCGTTTTACCTCGCATCCAACAGCTCTTTCGGAATCAAGTACCCATTGCTACCCTCCCCTGTCCCACCTTTACCCCAACACCCTATGGGGGCACCCTTACCCCCACACCCTATGGGTGCACCCTTACCCCCACACCCTATCGGGGCACCCTTACCCCCAGCCCCATCCGCCTTCATGTCCCCTACAAGCAGCAAGAACCCTGTCATGATCCTGAATGAGTTGCGGCCGGGCCTAAAGTATGACTTTGTGTCAGAGATCGGGGTGAGCCACGGCAAGAACTTTGTCATGTCCGTGACCGTAGATGCGCAGAACTTCCAGGGTTCTGGGCGGAACAAAAGGCTGGCCAAGGTCCGGGCTGCACAGGCGGCTCTGTTTTCTCTGTTTAACATGCAGCTGGATCAGGCTCCGTCCAGACAGCCGATACCCAGAGAAGGACTGCAGCTTCACCTGCCACAGGTCCTGGCAGACGCCGTCTCTCGTCTGGTCGTCGAAAAGTTCAGCGACCTCACCGAGGACTTCACGGCTCCACACGCTCAACGGAAAGTTCTGGCTGGTGCCGTCATGACAACGGGCACAGATGTGAAGGAGGCTCAGGTGATCTGCGTTACCACGGGAACAAAGTGCATCAACGGGGAATACATGAGCGACAGAGGTTTGGCCCTCAACGACTGCCACGCTGAGGTTTTGGCTCGCCGCTCGCTCGTCCGGTTCCTGTACTTGCAGCTGGAGCATTTCCTCAGTGACcaggaagaggagcagcagaAGTCCATCTTCAGCCAGTGTGAACACAGACGAGGTTTTAGACTGAAGGAAAACGTTCAGTTCCACCTTTACATCAGCACATCGCCCTGCGGAGACGCCCGCATCTTCTCTCCGCATGAAGCCGCCATGGAGGATCAGGGTGATAGACACCCAAACAGAAAGGCCCGCGGGCAGCTGCGCACTAAGATCGAGTCTGGTGAAGGAACCATCCCAGTCCGCTCCAGTAACCCCATTCAGACGTGGGACGGGGTTCTCCAGGGCGAGAGGCTGCTCACCATGTCCTGCAGTGACAAGATAGCCAgGTGGAACGTGGTTGGACTACAAGGCTCTCTGATGAGCTACTTCACCGAGGCCGTCTACTTCTCCAGCATCATCCTGGGCAGCCTGTACCATGCAGACCACTGCTCCAGAGCCATGTACCAGAGGATCACCGAGATCCAGGACCTGCCGCAGTCCTTCAGCCTCAACAGACCGCTGCTCAGCGtaaagggtCTGAATAGCTCTTCCACCGCTGGCCTACAGGAATCACGAACACGGAGGCTCGTCAGCCGGGAAAAGCTCCTAACATCAGCATGAACTGGACGCTGGGAGACCCAGGCTTGGAGGTGATCAATGCCACCACGGGAAAAGATGATCTGGGCCGACCCTCGCGGCTCTGCAAACACGCTCTGTTCAGCCGCTGGATGCGCCTCCAC

Function

symbol description
dhrsx Predicted to enable oxidoreductase activity. Orthologous to human DHRSX (dehydrogenase/reductase X-linked).
adarb1 Enables double-stranded RNA adenosine deaminase activity; double-stranded RNA binding activity; and identical protein binding activity. Involved in several processes, including RNA metabolic process; negative regulation of protein kinase activity by regulation of protein phosphorylation; and positive regulation of viral genome replication. Located in cytosol; nucleolus; and nucleoplasm. Biomarker of amyotrophic lateral sclerosis.

NR:

description
PREDICTED: double-stranded RNA-specific editase 1

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0004000 adenosine deaminase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12968 ADAR, ADAR1; double-stranded RNA-specific adenosine deaminase

RNA

RNA id representative length rna type GC content exon number start site end site
TU320543 False 898 lncRNA 0.53 3 20375595 20377740
XM_039792914.1 True 3003 mRNA 0.53 10 20355302 20375600
XM_039792915.1 False 2218 mRNA 0.57 9 20355302 20373867

Neighbor

gene id symbol gene type direction distance location
fam207a NA coding upstream 13399 20312524 ~ 20341903 (+)
LOC120554617 LOC108431163 coding upstream 29680 20323492 ~ 20325622 (+)
mxra5a NA coding upstream 84006 20258343 ~ 20271296 (+)
LOC120554034 NA coding upstream 320573 20029026 ~ 20034729 (+)
LOC120554605 pudp coding upstream 503348 19839605 ~ 19851954 (+)
gyg2 NA coding downstream 31272 20409012 ~ 20419118 (+)
LOC120554612 rcan1,LOC103389732 coding downstream 82234 20459974 ~ 20480326 (+)
LOC120554008 NA coding downstream 315220 20692960 ~ 20694611 (+)
LOC120554009 NA coding downstream 328652 20706392 ~ 20707535 (+)
ebpl NA coding downstream 510229 20887969 ~ 20889752 (+)
G236260 NA non-coding upstream 20332 20334361 ~ 20334970 (+)
G236258 NA non-coding upstream 56662 20298376 ~ 20298640 (+)
LOC120554047 NA non-coding upstream 70404 20283156 ~ 20284898 (+)
G236199 NA non-coding upstream 147366 20207730 ~ 20207936 (+)
G236196 NA non-coding upstream 169422 20185653 ~ 20185880 (+)
G236268 NA non-coding downstream 685 20378425 ~ 20380497 (+)
G236304 NA non-coding downstream 133934 20511674 ~ 20511988 (+)
G236312 NA non-coding downstream 180152 20557892 ~ 20558095 (+)
G236313 NA non-coding downstream 180515 20558255 ~ 20558599 (+)
LOC120554584 NA non-coding downstream 283637 20661377 ~ 20662785 (+)
prkx prkx other upstream 120450 20208329 ~ 20234852 (+)
G236162 NA other upstream 357635 19996799 ~ 19997667 (+)
nlgn4xa nlgn4x,nlgn4a,nlgn4,LOC102297792,LOC102198379,LOC102795219 other upstream 368573 19897092 ~ 19986729 (+)
anos1a LOC103358938 other upstream 656407 19671872 ~ 19698895 (+)
G235778 NA other upstream 2173490 18176825 ~ 18181812 (+)
cd99 NA other downstream 5578 20383318 ~ 20406326 (+)
LOC120554724 plcd4,LOC103363317 other downstream 109927 20487667 ~ 20511076 (+)
LOC120554627 runx1,LOC104961881 other downstream 217355 20595095 ~ 20635922 (+)
fmnl2b LOC101465085,LOC102790854,LOC102292591,LOC106517599,LOC100693318 other downstream 391736 20769476 ~ 20841778 (+)
cavin2b NA other downstream 467908 20845648 ~ 20887369 (+)

Expression


Co-expression Network