G236277 (adarb1,adarb1b,LOC105907970,LOC107754003)


Basic Information

Item Value
gene id G236277
gene name adarb1,adarb1b,LOC105907970,LOC107754003
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20367341 ~ 20368433 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU320553
CTGTGGCAGGTGAAGCTGCAGTCCTTCTCTGGGTATCGGCTGTCTGGACGGAGCCTGATCCAGCTGCATGTTAAACAGAGAAAACAGAGCCGCCTGTGCAGCCCGGACCTTGGCCAGCCTTTTGTTCCGCCCAGAACCCTGGAAGTTCTGCGCATCTACGGTCACGGACATGACAAAGTTCTTGCCGTGGCTCACCCCGATCTCTGACACAAAGTCATACTTTAGGCCCGGCCGCAACTCATTCAGGATCATGACAGGGTTCTTGCTGCTTGTAGGGGACATGAAGGCGGATGGGGCTGGGGGTAAGGGTGCCCCGATAGGGTGTGGGGGTAAGGGTGCACCCATAGGGTGTGGGGGTAAGGGTGCCCCCATAGGGTGTTGGGGTAAAGGTGGGACAGGGGAGGGTAGCAATGGGTACTTGATTCCGAAAGAGCTGTTGGATGCGAGGTAAAACGGGTCATCTACGGGACTGGATGTCTCAAAGGCGTTGAAGAGCATGTGAGGAAGTTCCGCCTGGTCCGAGGTGAAGTCTGTGTGACCAGACAGAGACCGGCCCATGGCCATGTGCGCTTCGGATGCGTTGGGGAACTGCACGAAGGAGCGCAGGGCCTTCTCCGCTGCGTTCAGCTTGGCCTTCTTCTTCGTAGGACCAGAACCCTCGAAGAGCAGCCCGTTGACCTCTACGGTCATCGCGAAGACGGGCGCATGGACCGGCCCGGTCTGAGAGAGCAGTTTGTACTGCAGCCCTTGCTTGAGCTCATTTAGCTGCATTAGGGCATTCTTAGGCAGAATGGGCCCAGTGACTTTCTTACGCTTCTTGGGCCTGTACTTGGAATGGGCATGCCCGTTATTGCCCTCCTCTAAGGGACGTTTCCTTTTCCTTCCTCCCCCAGCACTCCCATTGGGGAGCTGAGTAGCGTCAGCTGCAACCCCCTCTTTGGAGAAGAGGTTGTCCGAGTTCCGATTTTCCTTAACATCTGTGCGCCGTGAACCTGCAGTGCCCAGAAAGAGTAACGTACAATGCCTTCGTTGCAGGAtcttgtaaatgtaaaatttagAGATTCCTTTAGAGATTCTCTCTTTGCAACTGAAC

Function

symbol description
adarb1b Predicted to enable double-stranded RNA adenosine deaminase activity; double-stranded RNA binding activity; and tRNA-specific adenosine deaminase activity. Predicted to be involved in RNA processing and adenosine to inosine editing. Predicted to be active in cytoplasm and nucleolus. Is expressed in blood island; blood vessel; central nervous system; and immature eye. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human ADARB1 (adenosine deaminase RNA specific B1).
adarb1 Enables double-stranded RNA adenosine deaminase activity; double-stranded RNA binding activity; and identical protein binding activity. Involved in several processes, including RNA metabolic process; negative regulation of protein kinase activity by regulation of protein phosphorylation; and positive regulation of viral genome replication. Located in cytosol; nucleolus; and nucleoplasm. Biomarker of amyotrophic lateral sclerosis.

NR:

description
PREDICTED: double-stranded RNA-specific editase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU320553 True 1093 TUCP 0.55 1 20367341 20368433

Neighbor

gene id symbol gene type direction distance location
pnpla4 pnpla4 coding downstream 611372 19749071 ~ 19755969 (-)
aox6 NA coding downstream 713029 19622102 ~ 19654312 (-)
bzw1a LOC107384676,LOC108245120,LOC107082828,LOC103371116,LOC101480137,LOC103457358 coding downstream 745690 19608622 ~ 19621651 (-)
kynu kynu,LOC102785701 coding downstream 786083 19551436 ~ 19581258 (-)
acvr2ab acvr2a,LOC102784913,LOC103371821 coding downstream 1844325 18465948 ~ 18523016 (-)
dhrsx dhrsx,LOC104961879,LOC108244136,LOC106908010,LOC106908011 coding upstream 7160 20375593 ~ 20380492 (-)
LOC120554635 LOC104961873,LOC103363323 coding upstream 74548 20442981 ~ 20456063 (-)
LOC120554361 NA coding upstream 425913 20794346 ~ 20802270 (-)
vps16 vps16 coding upstream 485132 20853565 ~ 20867800 (-)
dytn NA coding upstream 597505 20965938 ~ 21075255 (-)
G236261 NA non-coding downstream 54514 20305493 ~ 20312827 (-)
G236249 LOC103376870 non-coding downstream 94607 20271475 ~ 20272734 (-)
G236248 LOC104951987,LOC103359801 non-coding downstream 95928 20270484 ~ 20271413 (-)
G236247 NA non-coding downstream 98674 20267867 ~ 20268667 (-)
G236246 NA non-coding downstream 100610 20266486 ~ 20266731 (-)
G236279 NA non-coding upstream 4567 20373000 ~ 20373241 (-)
G236282 NA non-coding upstream 14718 20383151 ~ 20394034 (-)
G236293 NA non-coding upstream 108753 20477186 ~ 20479038 (-)
G236294 rcan1,LOC106534915,LOC103389732 non-coding upstream 110722 20479155 ~ 20480319 (-)
G236303 NA non-coding upstream 140794 20509227 ~ 20511076 (-)
G236111 sts,LOC108241831 other downstream 634804 19731319 ~ 19732537 (-)
LOC120554050 f2,LOC106587117,LOC106561958,LOC100136077,LOC101463683,LOC102200345,LOC102207201 other downstream 838099 19523504 ~ 19529242 (-)
LOC120554371 mbd5,LOC102784158 other downstream 1927923 18404226 ~ 18439418 (-)
LOC120554370 LOC103370263 other downstream 2040238 18271078 ~ 18327103 (-)
s100b LOC103360204,LOC104927403 other downstream 2622084 17734731 ~ 17745257 (-)
G236340 NA other upstream 357970 20726403 ~ 20728427 (-)
G236349 NA other upstream 392275 20760708 ~ 20760992 (-)
rgn LOC103371141 other upstream 475059 20843492 ~ 20853383 (-)
G236646 NA other upstream 494247 20862680 ~ 20863311 (-)
LOC120554644 NA other upstream 524481 20892914 ~ 20920498 (-)

Expression


Co-expression Network