G236294 (rcan1,LOC106534915,LOC103389732)


Basic Information

Item Value
gene id G236294
gene name rcan1,LOC106534915,LOC103389732
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20479155 ~ 20480319 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU320577
CTCTTGTACagactttattttattgttttttgcagCTGAGCgtctcacaaacacaaacacaaagtcatGACACAATTCTAAATACACTCCAGCACCATTTTACCTAAAAACTACAATCACAACATTACACTTTACATTATTTTCTACATTTCAAAACTAATACTTCCTTCAGTTCTGTCTCGTATTATTTCATCAGCAGGGAAACACAATCTGCGAACGCATTTTCAGCTGCATTTTCCCCATATTTTAACAGAATTTTCCCCAGATTTTAGCAGAATCTTCTCCATattttctgcagattttcaacTAATTAAACAATTTATCCTTGAATCATCTGAAGGTTAAACACAACCGTGTTGTCTTCTACGAAGTTCATACCTCCGCTCTTTCCCCCGGTTTGTGAACGCAGCGTCGGTCTCTAACTTTTCTCGATATGAAATGTTTGGTCTCCGAGACACCGCGGGCTCCCAGAGCGTTTCCCACTCTCCGTCCGTCAGGATGAATGTCTCCGCCCCCGCTCCCTGATGGCGGCGGCGCTCACTGATCGTCTCCAAAGTCCGGCCGCCGCGTCTGGATGATCCGCGGCCGCAGGGGGCGGGGCTGGTCGTCGGGGTCGCTGTCGTCAGGGGTGGAGGTGTCGCCGCCGCGCTCGTCCTCGCAGATGTGGACGACGACACTCGGCGTGGTGGGCGTGGCCGTTTGCAGCTCGTACTGTTCCCCTGGTCCGAGCTTGGAGATGGCACACAGCAGGTCATAGTTGATGACGGGCATGGCGTCGTTGGACTGCTCCCAGCCGACGGGCGGCGACGCCGGCGGAGAGATCAGAAACTGTTTATCTGGTTTAGGAGGCATCAGCCGAGGACTCCCGATGTGCACC

Function

symbol description
rcan1 Enables identical protein binding activity. Involved in negative regulation of calcineurin-NFAT signaling cascade. Predicted to be active in cytoplasm and nucleus. Implicated in Alzheimer's disease.

NR:

description
PREDICTED: calcipressin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU320577 True 877 lncRNA 0.51 2 20479155 20480319

Neighbor

gene id symbol gene type direction distance location
LOC120554635 LOC104961873,LOC103363323 coding downstream 23092 20442981 ~ 20456063 (-)
dhrsx dhrsx,LOC104961879,LOC108244136,LOC106908010,LOC106908011 coding downstream 98663 20375593 ~ 20380492 (-)
pnpla4 pnpla4 coding downstream 723186 19749071 ~ 19755969 (-)
aox6 NA coding downstream 824843 19622102 ~ 19654312 (-)
bzw1a LOC107384676,LOC108245120,LOC107082828,LOC103371116,LOC101480137,LOC103457358 coding downstream 857504 19608622 ~ 19621651 (-)
LOC120554361 NA coding upstream 314027 20794346 ~ 20802270 (-)
vps16 vps16 coding upstream 373246 20853565 ~ 20867800 (-)
dytn NA coding upstream 485619 20965938 ~ 21075255 (-)
ftcd ftcd coding upstream 510571 20990890 ~ 21003269 (-)
LOC120554641 LOC103473932 coding upstream 646575 21126894 ~ 21149363 (-)
G236293 NA non-coding downstream 117 20477186 ~ 20479038 (-)
G236282 NA non-coding downstream 85121 20383151 ~ 20394034 (-)
G236279 NA non-coding downstream 105914 20373000 ~ 20373241 (-)
G236261 NA non-coding downstream 166328 20305493 ~ 20312827 (-)
G236249 LOC103376870 non-coding downstream 206421 20271475 ~ 20272734 (-)
G236303 NA non-coding upstream 28908 20509227 ~ 20511076 (-)
G236309 NA non-coding upstream 57582 20537901 ~ 20538114 (-)
G236310 NA non-coding upstream 60136 20540455 ~ 20540699 (-)
G236311 NA non-coding upstream 75396 20555715 ~ 20555983 (-)
G236326 runx1,LOC104961881 non-coding upstream 153559 20633878 ~ 20635879 (-)
G236277 adarb1,adarb1b,LOC105907970,LOC107754003 other downstream 110722 20367341 ~ 20368433 (-)
G236111 sts,LOC108241831 other downstream 746618 19731319 ~ 19732537 (-)
LOC120554050 f2,LOC106587117,LOC106561958,LOC100136077,LOC101463683,LOC102200345,LOC102207201 other downstream 949913 19523504 ~ 19529242 (-)
LOC120554371 mbd5,LOC102784158 other downstream 2039737 18404226 ~ 18439418 (-)
LOC120554370 LOC103370263 other downstream 2152052 18271078 ~ 18327103 (-)
G236340 NA other upstream 246084 20726403 ~ 20728427 (-)
G236349 NA other upstream 280389 20760708 ~ 20760992 (-)
rgn LOC103371141 other upstream 363173 20843492 ~ 20853383 (-)
G236646 NA other upstream 382361 20862680 ~ 20863311 (-)
LOC120554644 NA other upstream 412595 20892914 ~ 20920498 (-)

Expression


Co-expression Network