LOC120554011 (cd59,LOC102793758,LOC101486506,LOC100705993,LOC104934006,LOC103366567)


Basic Information

Item Value
gene id LOC120554011
gene name cd59,LOC102793758,LOC101486506,LOC100705993,LOC104934006,LOC103366567
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20976072 ~ 21077796 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU320752
GTTTCGGGGTCGTTGggggacaacacacacaagctattcttcttcttctgcactGAGATAAACGCTGGAgcttttcttctccttcttcttctgcaCTGAGATAAACGCTGAGACTCCCAGCCATCGTCATCACAGAGTTTGGCTGAGGCACAGACACGAAGTTAGATGAGCTTGTGAGGCTGGTGTGAAAATGAAGCGCTCCCTGGGTATCTGTCTGCTGTTCGGCTCCGCTCTGAATC
>TU320755
tgattatttacatggagtctggtggagatatgctggctctatacatgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacatgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacatgctaaaagtcctgattatttacatggagtctggtggagtttggtgctgagtctgctgtgtgttttcaggatcGGCTATCCGCTGTTTCAGCTGTAAGGACTACACGGCCAGCTGCTCCAAACAACGAGAGTGTAGCTATGACGACGCATGCCTCACACTCAGCGAGAGAGggGGGATGACCTACCGTCAGTGTCTCAAGTATTCAGACTGTGAGTACGGCCGGCTGGCCCAGATGTTCCCCCAGGTTTCCAGTTTTACCTTCAAGTGCTGCAACTCCGACCTGTGTAACTCCGCCCCTTCTTGTCAGCAGCAAGCTCTGTGATTGGTCTGCTGGCCGCGGCCGCTGTGACGTGGTGGTGCGTCCACTGATacaccaccacaacaacaacaacaacagcaactacAGCAGCTTcgctaacagccaatcagaatcacaCAATGTTACAACTAATCTCATCTAGTTCAAGATGTCGGATAACAGGgtcaaaacagacagacaggcagagagacagacaggcaggcaagcaggcagacagacagacagacagacagacagacagacaggttgatTTGGAGAATGCTGACAGCTCTCTTCATGGTGGAAACTTTAACAGCTTTATATGTTTATATTATTAAAAGATTTAATATCCTTAAAGTCATGTTTCATGGAACCATGGTAACCATGGTATCTGTGGGTATCAGCTGTTTGACAGGAAACAGCGTCTCTAACTAcagaccttcaaaataaaagagtcTTTAATAACTTGTCTgatttaaatcaataaatggTGACAAACTGGAAACACTCTCTTCTTCGACTGATTTTTTGG
>TU320756
tgattatttacatggagtctggtggagatatgctggctctatacatgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacatgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacatgctaaaagtcctgattatttacatggagtctggtggagtttggtgctgagtctgctgtgtgttttcaggatcGGCTATCCGCTGTTTCAGCTGTAAGGACTACACGGCCAGCTGCTCCAAACAACGAGAGTGTAGCTATGACGACGCATGCCTCACACTCAGCGAGAGAGggGGGATGACCTACCGTCAGTGTCTCAAGTATTCAGACTGTGAGTACGGCCGGCTGGCCCAGATGTTCCCCCAGGTTTCCAGTTTTACCTTCAAGTGCTGCAACTCCGACCTGTGTAACTCCGCCCCTTCTTGTCAGCAGCAAGCTCTGTGATTGGTCTGCTGGCCGCGGCCGCTGTGACGTGGTGGTGCGTCCACTGATacaccaccacaacaacaacaacaacagcaactacAGCAGCTTcgctaacagccaatcagaatcacaCAATGTTACAACTAATCTCATCTAGTTCAAGATGTCGGATAACAGGgtcaaaaacagacagacagacaggcagacaggcaggcagacagacagacag
>XM_039792559.1
ATGAAGCGCTCCCTGGGTATCTGTCTGCTGTTCGGCTCCGCTCTGAATCgatcGGCTATCCGCTGTTTCAGCTGTAAGGACTACACGGCCAGCTGCTCCAAACAACGAGAGTGTAGCTATGACGACGCATGCCTCACACTCAGCGAGAGAGggGGGATGACCTACCGTCAGTGTCTCAAGTATTCAGACTGTGAGTACGGCCGGCTGGCCCAGATGTTCCCCCAGGTTTCCAGTTTTACCTTCAAGTGCTGCAACTCCGACCTGTGTAACTCCGCCCCTTTGTCAGCAGCAAGCTCTGTGATTGGTCTGCTGGCCGCGGCCGCTGTGACGTGGTGGTGCGTCCACTGATacaccaccacaacaacaacaacaacagcaactacAGCAGCTTcgctaacagccaatcagaatcacaCAATGTTACAACTAATCTCATCTAGTTCAAGATGTCGGATAACAGGgtcaaaacagacagacaggcagagagacagacaggcaggcaagcaggcagacagacagagagagagacagacagacaggcagagagacaggcaaacagacagacagacagagagagagacatacagacagacaggcagaaagacagacagacaggcagagagagacatacagacaggcaggcagacagacagacaggttgatTTGGAGAATGCTGACAGCTCTCTTCATGGTGGAAACTTTAACAGCTTTATATGTTTATATTATTAAAAGATTTAATATCCTTAAAGTCATGTTTCATGGAACCATGGTAACCATGGTATCTGTGGGTATCAGCTGTTTGACAGGAAACAGCGTCTCTAACTAcagaccttcaaaataaaagagtcTTTAATAACTTGTCTgatttaaatcaataaatggTGACAAACTGGAAACACTC

Function

symbol description
cd59 Enables lipopolysaccharide binding activity and lipoteichoic acid binding activity. Acts upstream of or within defense response to Gram-negative bacterium and defense response to Gram-positive bacterium. Located in membrane. Is expressed in several structures, including blood; central nervous system; hypochord; ovary; and unfertilized egg. Human ortholog(s) of this gene implicated in colorectal carcinoma and ovarian cancer. Orthologous to human CD59 (CD59 molecule (CD59 blood group)).

NR:

description
PREDICTED: CD59 glycoprotein

GO:

id name namespace
GO:0001971 negative regulation of activation of membrane attack complex biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU320752 False 239 lncRNA 0.51 2 20976072 20978453
TU320755 True 990 lncRNA 0.45 5 20979907 21070444
TU320756 False 693 lncRNA 0.49 4 20979907 21077796
XM_039792559.1 False 901 mRNA 0.48 5 20978405 21070422

Neighbor

gene id symbol gene type direction distance location
eef1b2 eef1b2,LOC102792575 coding upstream 19800 20952152 ~ 20956272 (+)
ebpl NA coding upstream 86320 20887969 ~ 20889752 (+)
LOC120554009 NA coding upstream 268537 20706392 ~ 20707535 (+)
LOC120554008 NA coding upstream 281461 20692960 ~ 20694611 (+)
LOC120554612 rcan1,LOC103389732 coding upstream 495746 20459974 ~ 20480326 (+)
LOC120554651 NA coding downstream 20787 21098583 ~ 21120770 (+)
LOC120554012 NA coding downstream 80165 21157961 ~ 21165554 (+)
LOC120554666 NA coding downstream 88007 21165803 ~ 21191445 (+)
LOC120554662 NA coding downstream 211567 21289363 ~ 21292223 (+)
dph3 dph3,LOC107559917,LOC105022091,LOC107660145 coding downstream 289649 21367445 ~ 21371904 (+)
G236407 NA non-coding upstream 8339 20966396 ~ 20967733 (+)
G236405 NA non-coding upstream 10325 20962588 ~ 20965747 (+)
G236387 NA non-coding upstream 34615 20899018 ~ 20941457 (+)
G236388 NA non-coding upstream 44313 20900986 ~ 20931759 (+)
G236383 NA non-coding upstream 55309 20892919 ~ 20920763 (+)
G236440 NA non-coding downstream 74617 21152413 ~ 21233973 (+)
G236446 NA non-coding downstream 115807 21193603 ~ 21247124 (+)
G236448 NA non-coding downstream 119629 21197425 ~ 21223693 (+)
G236441 NA non-coding downstream 168768 21246564 ~ 21345168 (+)
G236455 NA non-coding downstream 218381 21296177 ~ 21330483 (+)
zdbf2 NA other upstream 11487 20956949 ~ 20964585 (+)
G236394 NA other upstream 59295 20912655 ~ 20916777 (+)
cavin2b NA other upstream 88703 20845648 ~ 20887369 (+)
fmnl2b LOC101465085,LOC102790854,LOC102292591,LOC106517599,LOC100693318 other upstream 134294 20769476 ~ 20841778 (+)
LOC120554627 runx1,LOC104961881 other upstream 340150 20595095 ~ 20635922 (+)
G236467 NA other downstream 224530 21302326 ~ 21361235 (+)
G236461 LOC102792843 other downstream 330131 21407927 ~ 21422915 (+)
G236459 LOC103360213,LOC106936810,LOC103477369,LOC103473932,LOC106933094,LOC107835021,LOC108249964,LOC107380983,LOC108250351,LOC108242155,LOC108250349,LOC108229490 other downstream 346489 21424285 ~ 21634001 (+)
G236530 NA other downstream 544702 21622498 ~ 21623439 (+)
G236466 NA other downstream 548142 21625938 ~ 21633849 (+)

Expression


Co-expression Network