G236448


Basic Information

Item Value
gene id G236448
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 21197425 ~ 21223693 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU320805
gtgtgtgtgtgtgtctgtgtgtctctgtgtgtgtgtctctgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtctgagACAGGACCAGAAACAGGTCCTGCACCCCTAAccctggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggtgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtctaacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacaggggaggtgtgttcaggtgcattctgg
>TU320806
gtgtgtgtgtgtgtctgtgtgtctctgggtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtctgagACAGGACCAGAAACAGGTCCTGCACCCCTAAccctggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgtgggggggtgtggttcttacagggaggtgtgttcaggtgcattctgggcgtgcttgtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagg
>TU320808
gtgtgtgtgtgtgtctgtgtgtctctgtgtgtgtgtctctgtgtgtgtgtctgtgtgcgtatctgtgtgtgtttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtttctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgggtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtctgagACAGGACCAGAAACAGGTCCTGCACCCCTAAccctggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggtgtgctggtcttacagggaggtgtgttcaggtgcattctgggtgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtctaacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacaggggaggtgtgttcaggtgcattctgg
>TU320810
gtgtgtctctgtgtctgtgtgtgtgtgtgggtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgt
>TU320811
gtgtgtgtgtgtgtctgtgtgtctctgtgtgtgtgtctctgtgtgtgtgtctgtgtgcgtatctgtgtgtgtttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtttctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgggtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtctgagACAGGACCAGAAACAGGTCCTGCACCCCTAAccctggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggtgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggtgtgctggtcttacagggaggtgtgttcaggtgcattctgggtgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtctaacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacaggggaggtgtgttcaggtgcattctgg
>TU320813
gtgtgtctctgtgggtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU320805 False 404 lncRNA 0.55 3 21197425 21203222
TU320806 False 442 lncRNA 0.54 2 21197425 21202606
TU320808 False 668 lncRNA 0.52 3 21197425 21203222
TU320810 False 293 lncRNA 0.50 3 21197907 21223693
TU320811 True 750 lncRNA 0.53 3 21197425 21203222
TU320813 False 277 lncRNA 0.50 3 21197907 21223693

Neighbor

gene id symbol gene type direction distance location
LOC120554666 NA coding upstream 5980 21165803 ~ 21191445 (+)
LOC120554012 NA coding upstream 31871 21157961 ~ 21165554 (+)
LOC120554651 NA coding upstream 76655 21098583 ~ 21120770 (+)
LOC120554645 NA coding upstream 133508 21049514 ~ 21063917 (+)
LOC120554642 NA coding upstream 150109 21027052 ~ 21047316 (+)
LOC120554662 NA coding downstream 65670 21289363 ~ 21292223 (+)
dph3 dph3,LOC107559917,LOC105022091,LOC107660145 coding downstream 143752 21367445 ~ 21371904 (+)
cdk15 cdk15,LOC100710713 coding downstream 148922 21372615 ~ 21392410 (+)
LOC120554659 NA coding downstream 379799 21603492 ~ 21605036 (+)
LOC120554665 NA coding downstream 388226 21611919 ~ 21612646 (+)
G236413 NA non-coding upstream 209014 20980566 ~ 20988411 (+)
G236407 NA non-coding upstream 229692 20966396 ~ 20967733 (+)
G236405 NA non-coding upstream 231678 20962588 ~ 20965747 (+)
G236387 NA non-coding upstream 255968 20899018 ~ 20941457 (+)
G236441 NA non-coding downstream 22871 21246564 ~ 21345168 (+)
G236455 NA non-coding downstream 72484 21296177 ~ 21330483 (+)
G236492 NA non-coding downstream 149428 21373121 ~ 21373379 (+)
G236443 NA non-coding downstream 151744 21375437 ~ 21387338 (+)
G236438 NA non-coding downstream 152784 21376477 ~ 21378434 (+)
LOC120554011 cd59,LOC102793758,LOC101486506,LOC100705993,LOC104934006,LOC103366567 other upstream 119629 20976072 ~ 21077796 (+)
zdbf2 NA other upstream 232840 20956949 ~ 20964585 (+)
G236394 NA other upstream 280648 20912655 ~ 20916777 (+)
cavin2b NA other upstream 310056 20845648 ~ 20887369 (+)
fmnl2b LOC101465085,LOC102790854,LOC102292591,LOC106517599,LOC100693318 other upstream 355647 20769476 ~ 20841778 (+)
G236467 NA other downstream 78633 21302326 ~ 21361235 (+)
G236461 LOC102792843 other downstream 184234 21407927 ~ 21422915 (+)
G236459 LOC103360213,LOC106936810,LOC103477369,LOC103473932,LOC106933094,LOC107835021,LOC108249964,LOC107380983,LOC108250351,LOC108242155,LOC108250349,LOC108229490 other downstream 200592 21424285 ~ 21634001 (+)
G236530 NA other downstream 398805 21622498 ~ 21623439 (+)
G236466 NA other downstream 402245 21625938 ~ 21633849 (+)

Expression


Co-expression Network